WormBase Tree Display for Gene: WBGene00003680
expand all nodes | collapse all nodes | view schema
| WBGene00003680 | SMap | S_parent | Sequence | ZK488 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-90 | Person_evidence | WBPerson600 | |||||
| Sequence_name | ZK488.2 | ||||||||
| Molecular_name | ZK488.2 | ||||||||
| ZK488.2.1 | |||||||||
| CE28191 | |||||||||
| Other_name | CELE_ZK488.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-90 | ||||||||
| DB_info | Database | AceView | gene | 5B89 | |||||
| WormQTL | gene | WBGene00003680 | |||||||
| WormFlux | gene | WBGene00003680 | |||||||
| NDB | locus_tag | CELE_ZK488.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003680|UniProtKB=O17025 | |||||||
| family | PTHR45680 | ||||||||
| NCBI | gene | 178577 | |||||||
| RefSeq | protein | NM_070862.6 | |||||||
| SwissProt | UniProtAcc | O17025 | |||||||
| TREEFAM | TREEFAM_ID | TF315604 | |||||||
| UniProt_GCRP | UniProtAcc | O17025 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (125) | |||||||||
| Strain | WBStrain00030266 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00029174 | ||||||||
| 00029175 | |||||||||
| 00029176 | |||||||||
| 00029177 | |||||||||
| 00111517 | |||||||||
| 00111518 | |||||||||
| 00111519 | |||||||||
| 00111520 | |||||||||
| Ortholog (22) | |||||||||
| Paralog (218) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in amphid neurons; intestine; and phasmid neurons. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK488.2 | |||||||
| Corresponding_transcript | ZK488.2.1 | ||||||||
| Associated_feature | WBsf978620 | ||||||||
| WBsf981883 | |||||||||
| WBsf231354 | |||||||||
| Transcription_factor | WBTranscriptionFactor000524 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00114464 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00022027 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059455 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038312 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7760 | ||||||||
| Expr1022716 | |||||||||
| Expr1031710 | |||||||||
| Expr1162881 | |||||||||
| Expr2014242 | |||||||||
| Expr2032483 | |||||||||
| Drives_construct | WBCnstr00012905 | ||||||||
| WBCnstr00035951 | |||||||||
| Construct_product | WBCnstr00016802 | ||||||||
| WBCnstr00016859 | |||||||||
| WBCnstr00035951 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (129) | |||||||||
| Interaction | WBInteraction000267543 | ||||||||
| WBInteraction000316620 | |||||||||
| WBInteraction000335193 | |||||||||
| WBInteraction000358649 | |||||||||
| WBInteraction000393410 | |||||||||
| WBInteraction000395373 | |||||||||
| WBInteraction000410046 | |||||||||
| WBInteraction000413571 | |||||||||
| WBInteraction000417488 | |||||||||
| WBInteraction000457399 | |||||||||
| Map_info | Map | V | Position | -19.974 | |||||
| Positive | Positive_clone | ZK488 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4974 | |||||||
| 5370 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
