WormBase Tree Display for Variation: WBVar00248555
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WBVar00248555 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00248555 | |||
Other_name | snp_ZK488[3] | ||||
cewivar00220607 | |||||
CE28191:p.Leu345= | |||||
ZK488.2.1:c.1033T>C | |||||
HGVSg | CHROMOSOME_V:g.611941T>C | ||||
Sequence_details | SMap | S_parent | Sequence | ZK488 | |
Flanking_sequences | gagaacgccgagatattctggaagg | taggcaaaattatgaagatcaataa | |||
Mapping_target | ZK488 | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00006622 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022856 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00003680 | |||
Transcript | ZK488.2.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | ZK488.2.1:c.1033T>C | ||||
HGVSp | CE28191:p.Leu345= | ||||
cDNA_position | 1072 | ||||
CDS_position | 1033 | ||||
Protein_position | 345 | ||||
Exon_number | 6/8 | ||||
Codon_change | Tta/Cta | ||||
Amino_acid_change | L | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.6508 VarS=CT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_ZK488.3 | |||||
[20040130 db] this Allele was previously named snp_ZK488.3 | |||||
[20090224 db] original Wicks name : ZK488:22777..23684@391 Psnp=0.6508 VarS=CT | |||||
[20090224 db] original Wicks id : eam31b05.s1@439,c,31 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |