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WormBase Tree Display for Variation: WBVar00248397

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Name Class

WBVar00248397NamePublic_nameWBVar00248397
Other_namesnp_Y116A8C[10]
haw159233
Y116A8C.26d.1:c.274-425C>T
Y116A8C.26a.1:c.1231-425C>T
HGVSgCHROMOSOME_IV:g.17084599G>A
Sequence_detailsSMapS_parentSequenceY116A8C
Flanking_sequencesgcaggatttttgaccgaaaatacttattttgggtcattttcgctgattttttcag
Mapping_targetY116A8C
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WGS_Yanai
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_Yanai
HistoryAcquires_mergeWBVar00579098
StatusLive
AffectsGeneWBGene00013803
TranscriptY116A8C.26a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY116A8C.26a.1:c.1231-425C>T
Intron_number7/15
Y116A8C.26d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY116A8C.26d.1:c.274-425C>T
Intron_number1/8
ReferenceWBPaper00038208
WBPaper00004703
RemarkPredicted SNP: Psnp=0.9173 VarS=AG
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_Y116A8C.10
[20040130 db] this Allele was previously named snp_Y116A8C.10
[20090224 db] original Wicks name : Y116A8C:183746..184665@762 Psnp=0.9173 VarS=AG
[20090224 db] original Wicks id : vc88b02.s1@96,a,43
[20090224 db] Snip-SNP
MethodSNP_Wicks