WormBase Tree Display for Variation: WBVar00248397
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WBVar00248397 | Name | Public_name | WBVar00248397 | ||
---|---|---|---|---|---|
Other_name | snp_Y116A8C[10] | ||||
haw159233 | |||||
Y116A8C.26d.1:c.274-425C>T | |||||
Y116A8C.26a.1:c.1231-425C>T | |||||
HGVSg | CHROMOSOME_IV:g.17084599G>A | ||||
Sequence_details | SMap | S_parent | Sequence | Y116A8C | |
Flanking_sequences | gcaggatttttgaccgaaaatactt | attttgggtcattttcgctgattttttcag | |||
Mapping_target | Y116A8C | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WGS_Yanai | |||||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_Yanai | |||||
History | Acquires_merge | WBVar00579098 | |||
Status | Live | ||||
Affects | Gene | WBGene00013803 | |||
Transcript | Y116A8C.26a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y116A8C.26a.1:c.1231-425C>T | ||||
Intron_number | 7/15 | ||||
Y116A8C.26d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y116A8C.26d.1:c.274-425C>T | ||||
Intron_number | 1/8 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
Remark | Predicted SNP: Psnp=0.9173 VarS=AG | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_Y116A8C.10 | |||||
[20040130 db] this Allele was previously named snp_Y116A8C.10 | |||||
[20090224 db] original Wicks name : Y116A8C:183746..184665@762 Psnp=0.9173 VarS=AG | |||||
[20090224 db] original Wicks id : vc88b02.s1@96,a,43 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |