WormBase Tree Display for Gene: WBGene00013803

WBGene00013803 SMap: S_parent: Sequence: Y116A8C
  Identity: Version: 2
    Name: CGC_name: snx-13 Person_evidence: WBPerson260
      Sequence_name: Y116A8C.26
      Molecular_name (12)
      Other_name: CELE_Y116A8C.26 Accession_evidence: NDB BX284604
      Public_name: snx-13
    DB_info: Database: AceView gene 4S24
        WormQTL gene WBGene00013803
        WormFlux gene WBGene00013803
        NDB locus_tag CELE_Y116A8C.26
        Panther gene CAEEL|WormBase=WBGene00013803|UniProtKB=Q9U2U6
          family PTHR22775
        NCBI gene 178482
        RefSeq protein NM_070625.8
            NM_001313045.3
            NM_001372974.2
            NM_001268990.3
        TREEFAM TREEFAM_ID TF324055
        TrEMBL UniProtAcc A0A0K3AUG5
            Q9U2U6
            A5HWB0
            H1UBK0
        UniProt_GCRP UniProtAcc Q9U2U6
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 12 Apr 2012 16:15:57 WBPerson2970 Name_change: CGC_name: snx-13
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: snx
    Allele (216)
    RNASeq_FPKM (74)
    GO_annotation: 00001255
      00001256
      00001257
      00004588
      00120579
    Contained_in_operon: CEOP4632
    Ortholog (37)
    Paralog: WBGene00013011 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable phosphatidylinositol binding activity. Predicted to be located in early endosome. Is an ortholog of human SNX13 (sorting nexin 13). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y116A8C.26a
      Y116A8C.26b
      Y116A8C.26c
      Y116A8C.26d
    Corresponding_CDS_history: Y116A8C.26:wp52
      Y116A8C.26a:wp229
    Corresponding_transcript: Y116A8C.26a.1
      Y116A8C.26b.1
      Y116A8C.26c.1
      Y116A8C.26d.1
    Other_sequence (29)
    Associated_feature: WBsf652412
      WBsf668578
      WBsf668579
      WBsf998964
      WBsf998965
      WBsf1018940
      WBsf1018941
      WBsf1018942
  Experimental_info: RNAi_result: WBRNAi00087629 Inferred_automatically: RNAi_primary
      WBRNAi00019924 Inferred_automatically: RNAi_primary
      WBRNAi00036608 Inferred_automatically: RNAi_primary
      WBRNAi00055443 Inferred_automatically: RNAi_primary
      WBRNAi00019925 Inferred_automatically: RNAi_primary
      WBRNAi00097736 Inferred_automatically: RNAi_primary
      WBRNAi00087651 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1024259
      Expr1036178
      Expr1158955
      Expr2015984
      Expr2034219
    Microarray_results (25)
    Expression_cluster (85)
    Interaction: WBInteraction000166701
      WBInteraction000359284
      WBInteraction000359285
      WBInteraction000359286
      WBInteraction000521576
      WBInteraction000552692
      WBInteraction000585270
  Map_info: Map: IV Position: 16.1251
    Positive: Positive_clone: Y116A8C Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00031805
    WBPaper00038491
    WBPaper00041771
    WBPaper00055090
    WBPaper00061460
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene