WormBase Tree Display for Variation: WBVar00248310
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| WBVar00248310 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00248310 | |||
| Other_name | snp_Y105E8A[16] | ||||
| Y105E8A.26d.1:c.1574+298G>T | |||||
| Y105E8A.26a.1:c.1946+298G>T | |||||
| Y105E8A.26c.1:c.1850+298G>T | |||||
| Y105E8A.26b.1:c.1946+298G>T | |||||
| HGVSg | CHROMOSOME_I:g.14540446G>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y105E8A | |
| Flanking_sequences | tcgttttaaaaaattcaaaaatttt | gctccgcccacttctgactcaaata | |||
| Mapping_target | Y105E8A | ||||
| Type_of_mutation | Substitution | G | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| Analysis | SNP_Wicks | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00013683 | |||
| Transcript | Y105E8A.26d.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105E8A.26d.1:c.1574+298G>T | ||||
| Intron_number | 4/9 | ||||
| Y105E8A.26b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105E8A.26b.1:c.1946+298G>T | ||||
| Intron_number | 8/13 | ||||
| Y105E8A.26a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105E8A.26a.1:c.1946+298G>T | ||||
| Intron_number | 8/14 | ||||
| Y105E8A.26c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105E8A.26c.1:c.1850+298G>T | ||||
| Intron_number | 6/12 | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.8806 VarS=GT | ||||
| Enzymes. Bristol-specific: [AspNI,BcrI,BsaEI,BscBI,Bsp29I,BspLI,BssI,CviJI,CviKI,CviLI,CviMI,CviNI,CviOI,CviTI,HpyF44II,HpyF73I,NgoBV,NgoGV,NlaIV,PspN4I,Rlu3I,Uba1305I,Uba1445I]. CB4856-specific [none]. | |||||
| [20040130 db] this Locus was previously named snp_Y105E8.16 | |||||
| [20040130 db] this Allele was previously named snp_Y105E8.16 | |||||
| [20090224 db] this Variation was previously named snp_Y105E8[16] | |||||
| [20090224 db] original Wicks name : Y105E8A:206642..207449@646 Psnp=0.8806 VarS=GT | |||||
| [20090224 db] original Wicks id : ye40a11.s1@99,t,39 | |||||
| [20090224 db] Snip-SNP | |||||
| Method | SNP_Wicks |
