WormBase Tree Display for Variation: WBVar00248255
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| WBVar00248255 | Name | Public_name | WBVar00248255 | ||
|---|---|---|---|---|---|
| Other_name | snp_Y105C5B[13] | ||||
| haw158011 | |||||
| cewivar00216089 | |||||
| Y105C5B.6c.1:c.227-594C>T | |||||
| Y105C5B.6a.1:c.227-594C>T | |||||
| HGVSg | CHROMOSOME_IV:g.15907531C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y105C5B | |
| Flanking_sequences | tttcaagctttttttttaaattcct | gatgtccatgaataacgtggaaaac | |||
| Mapping_target | Y105C5B | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| Person | WBPerson4037 | ||||
| Analysis | SNP_Wicks | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00577876 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00005726 | |||
| WBGene00048011 | |||||
| WBGene00166240 | |||||
| Transcript | Y105C5B.6a.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105C5B.6a.1:c.227-594C>T | ||||
| Intron_number | 1/7 | ||||
| Y105C5B.291 | |||||
| Y105C5B.701 | |||||
| Y105C5B.6c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105C5B.6c.1:c.227-594C>T | ||||
| Intron_number | 1/7 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00004703 | |||||
| Remark | Predicted SNP: Psnp=0.9391 VarS=CT | ||||
| Enzymes. Bristol-specific: [CviSIII,EsaBC3I,Hpy166III,Hpy26II,HpyF14III,HpyF16I,HpyF23I,HpyF24I,HpyF26III,HpyF30I,HpyF35I,HpyF40II,HpyF42IV,HpyF45I,HpyF49I,HpyF52I,HpyF59III,HpyF62II,HpyF64I,HpyF65II,HpyF66IV,HpyF71I,HpyF73II,HpyJP26II,HpyV,MnlI,PpaAII,Taq20I,TaqI,Tbr51I,TfiA3I,TfiTok4A2I,TfiTok6A1I,TflI,Tsc4aI,Tsp32I,Tsp32II,Tsp358I,Tsp505I,Tsp510I,TspAK13D21I,TspAK16D24I,TspNI,TspVi4AI,TspVil3I,Tth24I,TthHB8I,TthRQI]. CB4856-specific [none]. | |||||
| [20040130 db] this Locus was previously named snp_Y105C5B.13 | |||||
| [20040130 db] this Allele was previously named snp_Y105C5B.13 | |||||
| [20090224 db] original Wicks name : Y105C5B:43678..44616@131 Psnp=0.9391 VarS=CT | |||||
| [20090224 db] original Wicks id : eam56f10.s1@52,t,51 | |||||
| [20090224 db] Snip-SNP | |||||
| Method | SNP_Wicks |
