WormBase Tree Display for Variation: WBVar00247729

WBVar00247729 Name: Public_name: WBVar00247729
    Other_name: snp_Y57A10A[5]
      haw133985
      cewivar00186595
      Y57A10A.13.1:c.978A>T
      CE25500:p.Gly326=
    HGVSg: CHROMOSOME_II:g.12181234T>A
  Sequence_details: SMap: S_parent: Sequence: Y57A10A
    Flanking_sequences: cccatccagtatgaatagccgtaga ccctgatgttctccattcaaatccc
    Mapping_target: Y57A10A
    Type_of_mutation: Substitution: T A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
          WGS_De_Bono
          WGS_Yanai
          Million_mutation_project_reanalysis
    Laboratory: AX
    Person: WBPerson4037
    Analysis: SNP_Wicks
      WGS_De_Bono
      WGS_Yanai
      Million_mutation_project_reanalysis
    History: Acquires_merge: WBVar01378256
        WBVar00553850
    Status: Live
  Affects: Gene: WBGene00013256
    Transcript: Y57A10A.13.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y57A10A.13.1:c.978A>T
        HGVSp: CE25500:p.Gly326=
        cDNA_position: 1033
        CDS_position: 978
        Protein_position: 326
        Exon_number: 5/10
        Codon_change: ggA/ggT
        Amino_acid_change: G
  Reference: WBPaper00038208
    WBPaper00004703
    WBPaper00037807
  Remark: Predicted SNP: Psnp=0.9301 VarS=AT
    Enzymes. Bristol-specific: [AclWI,AitAI,AitII,AlwI,Asp14HI,Asp17I,Asp1HI,Asp21HI,Asp22I,Asp6HI,Asp8HI,AspMDI,AsuMBI,Bce243I,Bfi57I,BloHI,Bme12I,BsaPI,BscFI,BscSI,BsmXII,Bsp105I,Bsp122I,Bsp135I,Bsp136I,Bsp138I,Bsp143I,Bsp147I,Bsp18I,Bsp2095I,Bsp49I,Bsp51I,Bsp52I,Bsp54I,Bsp57I,Bsp58I,Bsp59I,Bsp60I,Bsp61I,Bsp64I,Bsp65I,Bsp66I,Bsp67I,Bsp72I,Bsp74I,Bsp76I,Bsp91I,Bsp9I,BspAI,BspFI,BspI,BspJ64I,BspJI,BspKT6I,BspPI,BsrMI,BsrPII,BsrWI,BssGII,Bst1274I,Bst31TI,BstEIII,BstH9I,BstX2I,BstXII,BstYI,BtcI,BthII,BtkII,Btu33I,Btu34I,Btu36I,Btu37I,Btu39I,Btu41I,CacI,CcoP219I,CcoP31I,CcoP76I,CcoP84I,CcoP95II,CcyI,CfuI,ChaI,Cin1467I,CjeP338I,CpaI,CpfAI,CpfI,Csp5I,Cte1179I,Cte1180I,CtyI,CviAI,CviHI,DpnI,DpnII,DsaIII,FnuAII,FnuCI,FnuEI,HacI,HpyAIII,HpyHPK5II,Kzo9I,LlaAI,LlaDCHI,LlaKR2I,Lsp1109II,MboI,MeuI,MflI,MgoI,MjaIII,MkrAI,MmeII,MnoIII,MosI,Mph1103II,Msp67II,MspBI,Mth1047I,MthAI,MthI,NanII,NciAI,NdeII,NflAII,NflBI,NflI,NgoDXIV,NlaDI,NlaII,NmeCI,NmuDI,NmuEI,NphI,NsiAI,NspAI,NsuDI,NsuI,Pei9403I,PfaI,Pph288I,PsuI,Ral8I,RalF40I,Rlu1I,SalAI,SalHI,Sau15I,Sau3AI,Sau6782I,SauCI,SauDI,SauEI,SauFI,SauGI,SauMI,SinMI,SmiMBI,Tru201I,TruII,Tsp133I,Uba1101I,Uba1177I,Uba1182I,Uba1183I,Uba1204I,Uba1259I,Uba1317I,Uba1323I,Uba1366I,Uba1432I,Uba4I,Uba59I,Vha44I,XhoII]. CB4856-specific [none].
    [20040130 db] this Locus was previously named snp_Y57A10.5
    [20040130 db] this Allele was previously named snp_Y57A10.5
    [20090224 db] this Variation was previously named snp_Y57A10[5]
    [20090224 db] original Wicks name : Y57A10A:44590..45357@275 Psnp=0.9301 VarS=AT
    [20090224 db] original Wicks id : vl29a05.s1@205,a,46
    [20090224 db] Snip-SNP
  Method: SNP_Wicks