WormBase Tree Display for Variation: WBVar00247675
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WBVar00247675 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00247675 | |||
Other_name | snp_Y54G11B[8] | ||||
Y54G11B.1.2:c.1010+29del | |||||
Y54G11B.1.1:c.1010+29del | |||||
HGVSg | CHROMOSOME_II:g.14464354del | ||||
Sequence_details | SMap | S_parent | Sequence | Y54G11B | |
Flanking_sequences | TCAGCTTGTTACCATTGACAAAGTAAGATTTTCAGAAGAGAAAATTTGTT | GCTTTGTAAAGGGAAAACTAACTTACATTAAAAGATCCCTGAAAAAGTCA | |||
Mapping_target | Y54G11B | ||||
Type_of_mutation | Deletion | T | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00013222 | |||
Transcript | Y54G11B.1.2 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G11B.1.2:c.1010+29del | ||||
Intron_number | 7/8 | ||||
Y54G11B.1.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G11B.1.1:c.1010+29del | ||||
Intron_number | 8/9 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9212 VarD1=T | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_Y54G11B.8 | |||||
[20040130 db] this Allele was previously named snp_Y54G11B.8 | |||||
[20090224 db] original Wicks name : Y54G11B:9141..9926@549 Psnp=0.9212 VarD1=T | |||||
[20090224 db] original Wicks id : yw09b09.s1@319,-,56 | |||||
Method | SNP_Wicks |