WormBase Tree Display for Variation: WBVar00247536
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WBVar00247536 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00247536 | |||
Other_name | snp_Y53C10A[6] | ||||
Y53C10A.12.2:c.1360_1361insTG | |||||
CE22380:p.Pro454LeufsTer38 | |||||
Y53C10A.12.1:c.1360_1361insTG | |||||
HGVSg | CHROMOSOME_I:g.11956754_11956755insCA | ||||
Sequence_details | SMap | S_parent | Sequence | Y53C10A | |
Flanking_sequences | cttgctccagctccagctccagatg | gagccgaagatgatgtagatggtcc | |||
Mapping_target | Y53C10A | ||||
Type_of_mutation | Insertion | CA | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00002004 | |||
Transcript | Y53C10A.12.2 | VEP_consequence | frameshift_variant | ||
VEP_impact | HIGH | ||||
HGVSc | Y53C10A.12.2:c.1360_1361insTG | ||||
HGVSp | CE22380:p.Pro454LeufsTer38 | ||||
cDNA_position | 1532-1533 | ||||
CDS_position | 1360-1361 | ||||
Protein_position | 454 | ||||
Exon_number | 8/11 | ||||
Codon_change | cca/cTGca | ||||
Amino_acid_change | P/LX | ||||
Y53C10A.12.1 | VEP_consequence | frameshift_variant | |||
VEP_impact | HIGH | ||||
HGVSc | Y53C10A.12.1:c.1360_1361insTG | ||||
HGVSp | CE22380:p.Pro454LeufsTer38 | ||||
cDNA_position | 1382-1383 | ||||
CDS_position | 1360-1361 | ||||
Protein_position | 454 | ||||
Exon_number | 7/10 | ||||
Codon_change | cca/cTGca | ||||
Amino_acid_change | P/LX | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8227 VarI2=CA | ||||
Enzymes. Bristol-specific: [AspNI,BcrI,BsaEI,BscBI,Bsp29I,BspLI,BssI,HpyF44II,HpyF73I,NgoBV,NgoGV,NlaIV,PspN4I,Rlu3I,Uba1305I,Uba1445I]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_Y53C10.6 | |||||
[20040130 db] this Allele was previously named snp_Y53C10.6 | |||||
[20090224 db] this Variation was previously named snp_Y53C10[6] | |||||
[20090224 db] original Wicks name : Y53C10A:4117..5006@317 Psnp=0.8227 VarI2=CA | |||||
[20090224 db] original Wicks id : vl28h10.s1@246,a,38 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |