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WormBase Tree Display for Variation: WBVar00247536

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Name Class

WBVar00247536EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00247536
Other_namesnp_Y53C10A[6]
Y53C10A.12.2:c.1360_1361insTG
CE22380:p.Pro454LeufsTer38
Y53C10A.12.1:c.1360_1361insTG
HGVSgCHROMOSOME_I:g.11956754_11956755insCA
Sequence_detailsSMapS_parentSequenceY53C10A
Flanking_sequencescttgctccagctccagctccagatggagccgaagatgatgtagatggtcc
Mapping_targetY53C10A
Type_of_mutationInsertionCA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00002004
TranscriptY53C10A.12.2VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScY53C10A.12.2:c.1360_1361insTG
HGVSpCE22380:p.Pro454LeufsTer38
cDNA_position1532-1533
CDS_position1360-1361
Protein_position454
Exon_number8/11
Codon_changecca/cTGca
Amino_acid_changeP/LX
Y53C10A.12.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScY53C10A.12.1:c.1360_1361insTG
HGVSpCE22380:p.Pro454LeufsTer38
cDNA_position1382-1383
CDS_position1360-1361
Protein_position454
Exon_number7/10
Codon_changecca/cTGca
Amino_acid_changeP/LX
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.8227 VarI2=CA
Enzymes. Bristol-specific: [AspNI,BcrI,BsaEI,BscBI,Bsp29I,BspLI,BssI,HpyF44II,HpyF73I,NgoBV,NgoGV,NlaIV,PspN4I,Rlu3I,Uba1305I,Uba1445I]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_Y53C10.6
[20040130 db] this Allele was previously named snp_Y53C10.6
[20090224 db] this Variation was previously named snp_Y53C10[6]
[20090224 db] original Wicks name : Y53C10A:4117..5006@317 Psnp=0.8227 VarI2=CA
[20090224 db] original Wicks id : vl28h10.s1@246,a,38
[20090224 db] Snip-SNP
MethodSNP_Wicks