WormBase Tree Display for Variation: WBVar00247534
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WBVar00247534 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00247534 | |||
Other_name | snp_Y53C10A[4] | ||||
CE22380:p.Ser455Ala | |||||
Y53C10A.12.2:c.1363T>G | |||||
Y53C10A.12.1:c.1363T>G | |||||
HGVSg | CHROMOSOME_I:g.11956752A>C | ||||
Sequence_details | SMap | S_parent | Sequence | Y53C10A | |
Flanking_sequences | attcttgctccagctccagctccag | tggagccgaagatgatgtagatggt | |||
Mapping_target | Y53C10A | ||||
Type_of_mutation | Substitution | A | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00002004 | |||
Transcript | Y53C10A.12.2 | VEP_consequence | missense_variant | ||
VEP_impact | MODERATE | ||||
HGVSc | Y53C10A.12.2:c.1363T>G | ||||
HGVSp | CE22380:p.Ser455Ala | ||||
cDNA_position | 1535 | ||||
CDS_position | 1363 | ||||
Protein_position | 455 | ||||
Exon_number | 8/11 | ||||
Codon_change | Tct/Gct | ||||
Amino_acid_change | S/A | ||||
Y53C10A.12.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | ||||
HGVSc | Y53C10A.12.1:c.1363T>G | ||||
HGVSp | CE22380:p.Ser455Ala | ||||
cDNA_position | 1385 | ||||
CDS_position | 1363 | ||||
Protein_position | 455 | ||||
Exon_number | 7/10 | ||||
Codon_change | Tct/Gct | ||||
Amino_acid_change | S/A | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.7699 VarS=AC | ||||
Enzymes. Bristol-specific: [Hpy188III,HpyCH4VI,HpyF16II,HpyF19III,HpyF22III,HpyF44IV]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_Y53C10.4 | |||||
[20040130 db] this Allele was previously named snp_Y53C10.4 | |||||
[20090224 db] this Variation was previously named snp_Y53C10[4] | |||||
[20090224 db] original Wicks name : Y53C10A:4117..5006@315 Psnp=0.7699 VarS=AC | |||||
[20090224 db] original Wicks id : vl28h10.s1@242,c,34 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |