Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00247534

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00247534EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00247534
Other_namesnp_Y53C10A[4]
CE22380:p.Ser455Ala
Y53C10A.12.2:c.1363T>G
Y53C10A.12.1:c.1363T>G
HGVSgCHROMOSOME_I:g.11956752A>C
Sequence_detailsSMapS_parentSequenceY53C10A
Flanking_sequencesattcttgctccagctccagctccagtggagccgaagatgatgtagatggt
Mapping_targetY53C10A
Type_of_mutationSubstitutionAC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00002004
TranscriptY53C10A.12.2VEP_consequencemissense_variant
VEP_impactMODERATE
HGVScY53C10A.12.2:c.1363T>G
HGVSpCE22380:p.Ser455Ala
cDNA_position1535
CDS_position1363
Protein_position455
Exon_number8/11
Codon_changeTct/Gct
Amino_acid_changeS/A
Y53C10A.12.1VEP_consequencemissense_variant
VEP_impactMODERATE
HGVScY53C10A.12.1:c.1363T>G
HGVSpCE22380:p.Ser455Ala
cDNA_position1385
CDS_position1363
Protein_position455
Exon_number7/10
Codon_changeTct/Gct
Amino_acid_changeS/A
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.7699 VarS=AC
Enzymes. Bristol-specific: [Hpy188III,HpyCH4VI,HpyF16II,HpyF19III,HpyF22III,HpyF44IV]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_Y53C10.4
[20040130 db] this Allele was previously named snp_Y53C10.4
[20090224 db] this Variation was previously named snp_Y53C10[4]
[20090224 db] original Wicks name : Y53C10A:4117..5006@315 Psnp=0.7699 VarS=AC
[20090224 db] original Wicks id : vl28h10.s1@242,c,34
[20090224 db] Snip-SNP
MethodSNP_Wicks