WormBase Tree Display for Variation: WBVar00247311
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| WBVar00247311 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00247311 | |||
| Other_name | snp_Y47D3A[19] | ||||
| Y47D3A.17e.1:c.848+776_848+777insT | |||||
| Y47D3A.17c.1:c.1178+776_1178+777insT | |||||
| Y47D3A.17b.4:c.533+776_533+777insT | |||||
| Y47D3A.17b.1:c.533+776_533+777insT | |||||
| Y47D3A.17b.3:c.533+776_533+777insT | |||||
| Y47D3A.17b.2:c.533+776_533+777insT | |||||
| Y47D3A.17a.1:c.950+776_950+777insT | |||||
| HGVSg | CHROMOSOME_III:g.11262591dup | ||||
| Sequence_details | SMap | S_parent | Sequence | Y47D3A | |
| Flanking_sequences | gttactaaaattgccaaaaaaaaaa | ctagaattagaaatttgtattcaat | |||
| Mapping_target | Y47D3A | ||||
| Type_of_mutation | Insertion | A | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| Analysis | SNP_Wicks | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00012930 | |||
| Transcript | Y47D3A.17c.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47D3A.17c.1:c.1178+776_1178+777insT | ||||
| Intron_number | 7/14 | ||||
| Y47D3A.17b.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47D3A.17b.3:c.533+776_533+777insT | ||||
| Intron_number | 7/15 | ||||
| Y47D3A.17a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47D3A.17a.1:c.950+776_950+777insT | ||||
| Intron_number | 9/17 | ||||
| Y47D3A.17e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47D3A.17e.1:c.848+776_848+777insT | ||||
| Intron_number | 8/15 | ||||
| Y47D3A.17b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47D3A.17b.1:c.533+776_533+777insT | ||||
| Intron_number | 8/16 | ||||
| Y47D3A.17b.4 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47D3A.17b.4:c.533+776_533+777insT | ||||
| Intron_number | 6/13 | ||||
| Y47D3A.17b.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47D3A.17b.2:c.533+776_533+777insT | ||||
| Intron_number | 8/16 | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.9221 VarI1=A | ||||
| Enzymes. SNP detectable only by sequencing. | |||||
| [20040130 db] this Locus was previously named snp_Y47D3.19 | |||||
| [20040130 db] this Allele was previously named snp_Y47D3.19 | |||||
| [20090224 db] this Variation was previously named snp_Y47D3[19] | |||||
| [20090224 db] original Wicks name : Y47D3A:125869..126902@573 Psnp=0.9221 VarI1=A | |||||
| [20090224 db] original Wicks id : yy41g02.s1@510,a,59 | |||||
| Method | SNP_Wicks |
