Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00247015

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00247015EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00247015
Other_namesnp_Y39A1A[2]
Y39A1A.24.1:c.-706del
Y39A1A.5a.1:c.*376del
HGVSgCHROMOSOME_III:g.10613209del
Sequence_detailsSMapS_parentSequenceY39A1A
Flanking_sequencescggattttgccaattaaaaaaaaaatttccaaaattttttgtatttgtga
Mapping_targetY39A1A
Type_of_mutationDeletionA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00012660
WBGene00012644
TranscriptY39A1A.24.1VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScY39A1A.24.1:c.-706del
cDNA_position577
Exon_number1/4
Y39A1A.5a.1VEP_consequence3_prime_UTR_variant
VEP_impactMODIFIER
HGVScY39A1A.5a.1:c.*376del
cDNA_position1951
Exon_number11/11
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.9221 VarD1=A
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_Y39A1.2
[20040130 db] this Allele was previously named snp_Y39A1.2
[20090224 db] this Variation was previously named snp_Y39A1[2]
[20090224 db] original Wicks name : Y39A1A:16809..17579@522 Psnp=0.9221 VarD1=A
[20090224 db] original Wicks id : yy61b10.s1@194,-,59
MethodSNP_Wicks