WormBase Tree Display for Variation: WBVar00247015
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WBVar00247015 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00247015 | |||
Other_name | snp_Y39A1A[2] | ||||
Y39A1A.24.1:c.-706del | |||||
Y39A1A.5a.1:c.*376del | |||||
HGVSg | CHROMOSOME_III:g.10613209del | ||||
Sequence_details | SMap | S_parent | Sequence | Y39A1A | |
Flanking_sequences | cggattttgccaattaaaaaaaaaa | tttccaaaattttttgtatttgtga | |||
Mapping_target | Y39A1A | ||||
Type_of_mutation | Deletion | A | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00012660 | |||
WBGene00012644 | |||||
Transcript | Y39A1A.24.1 | VEP_consequence | 5_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y39A1A.24.1:c.-706del | ||||
cDNA_position | 577 | ||||
Exon_number | 1/4 | ||||
Y39A1A.5a.1 | VEP_consequence | 3_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y39A1A.5a.1:c.*376del | ||||
cDNA_position | 1951 | ||||
Exon_number | 11/11 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9221 VarD1=A | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_Y39A1.2 | |||||
[20040130 db] this Allele was previously named snp_Y39A1.2 | |||||
[20090224 db] this Variation was previously named snp_Y39A1[2] | |||||
[20090224 db] original Wicks name : Y39A1A:16809..17579@522 Psnp=0.9221 VarD1=A | |||||
[20090224 db] original Wicks id : yy61b10.s1@194,-,59 | |||||
Method | SNP_Wicks |