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WormBase Tree Display for Variation: WBVar00246980

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Name Class

WBVar00246980EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00246980
Other_namesnp_Y38F1A[9]
Y38F1A.5.1:c.*204_*207dup
Y38F1A.5.2:c.*204_*207dup
HGVSgCHROMOSOME_II:g.12992758_12992761dup
Sequence_detailsSMapS_parentSequenceY38F1A
Flanking_sequencestgaaaaaaataatatatatatatattaaaacatttattctaagttatttc
Mapping_targetY38F1A
Type_of_mutationInsertionATAT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00000870
TranscriptY38F1A.5.2VEP_consequence3_prime_UTR_variant
VEP_impactMODIFIER
HGVScY38F1A.5.2:c.*204_*207dup
cDNA_position1656-1657
Exon_number8/8
Y38F1A.5.1VEP_consequence3_prime_UTR_variant
VEP_impactMODIFIER
HGVScY38F1A.5.1:c.*204_*207dup
cDNA_position1425-1426
Exon_number6/6
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.6214 VarI4=ATAT
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_Y38F1.9
[20040130 db] this Allele was previously named snp_Y38F1.9
[20090224 db] this Variation was previously named snp_Y38F1[9]
[20090224 db] original Wicks name : Y38F1A:43070..44015@541 Psnp=0.6214 VarI4=ATAT
[20090224 db] original Wicks id : eam68c12.s1@478,t,32
MethodSNP_Wicks