WormBase Tree Display for Variation: WBVar00246980
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WBVar00246980 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00246980 | |||
Other_name | snp_Y38F1A[9] | ||||
Y38F1A.5.1:c.*204_*207dup | |||||
Y38F1A.5.2:c.*204_*207dup | |||||
HGVSg | CHROMOSOME_II:g.12992758_12992761dup | ||||
Sequence_details | SMap | S_parent | Sequence | Y38F1A | |
Flanking_sequences | tgaaaaaaataatatatatatatat | taaaacatttattctaagttatttc | |||
Mapping_target | Y38F1A | ||||
Type_of_mutation | Insertion | ATAT | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00000870 | |||
Transcript | Y38F1A.5.2 | VEP_consequence | 3_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y38F1A.5.2:c.*204_*207dup | ||||
cDNA_position | 1656-1657 | ||||
Exon_number | 8/8 | ||||
Y38F1A.5.1 | VEP_consequence | 3_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y38F1A.5.1:c.*204_*207dup | ||||
cDNA_position | 1425-1426 | ||||
Exon_number | 6/6 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.6214 VarI4=ATAT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_Y38F1.9 | |||||
[20040130 db] this Allele was previously named snp_Y38F1.9 | |||||
[20090224 db] this Variation was previously named snp_Y38F1[9] | |||||
[20090224 db] original Wicks name : Y38F1A:43070..44015@541 Psnp=0.6214 VarI4=ATAT | |||||
[20090224 db] original Wicks id : eam68c12.s1@478,t,32 | |||||
Method | SNP_Wicks |