WormBase Tree Display for Variation: WBVar00246977
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WBVar00246977 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00246977 | |||
Other_name | snp_Y38F1A[5] | ||||
Y38F1A.5.2:c.706+440dup | |||||
Y38F1A.5.1:c.706+440dup | |||||
HGVSg | CHROMOSOME_II:g.12989774dup | ||||
Sequence_details | SMap | S_parent | Sequence | Y38F1A | |
Flanking_sequences | aagaaggaagaagcctgtttttttt | gcactttccatattgattcatcatt | |||
Mapping_target | Y38F1A | ||||
Type_of_mutation | Insertion | T | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00000870 | |||
Transcript | Y38F1A.5.2 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y38F1A.5.2:c.706+440dup | ||||
Intron_number | 5/7 | ||||
Y38F1A.5.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y38F1A.5.1:c.706+440dup | ||||
Intron_number | 3/5 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9011 VarI1=T | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_Y38F1.5 | |||||
[20040130 db] this Allele was previously named snp_Y38F1.5 | |||||
[20090224 db] this Variation was previously named snp_Y38F1[5] | |||||
[20090224 db] original Wicks name : Y38F1A:39809..40790@815 Psnp=0.9011 VarI1=T | |||||
[20090224 db] original Wicks id : eam47d06.s1@95,t,45 | |||||
Method | SNP_Wicks |