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WormBase Tree Display for Variation: WBVar00246977

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Name Class

WBVar00246977EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00246977
Other_namesnp_Y38F1A[5]
Y38F1A.5.2:c.706+440dup
Y38F1A.5.1:c.706+440dup
HGVSgCHROMOSOME_II:g.12989774dup
Sequence_detailsSMapS_parentSequenceY38F1A
Flanking_sequencesaagaaggaagaagcctgttttttttgcactttccatattgattcatcatt
Mapping_targetY38F1A
Type_of_mutationInsertionT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00000870
TranscriptY38F1A.5.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY38F1A.5.2:c.706+440dup
Intron_number5/7
Y38F1A.5.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY38F1A.5.1:c.706+440dup
Intron_number3/5
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.9011 VarI1=T
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_Y38F1.5
[20040130 db] this Allele was previously named snp_Y38F1.5
[20090224 db] this Variation was previously named snp_Y38F1[5]
[20090224 db] original Wicks name : Y38F1A:39809..40790@815 Psnp=0.9011 VarI1=T
[20090224 db] original Wicks id : eam47d06.s1@95,t,45
MethodSNP_Wicks