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WormBase Tree Display for Variation: WBVar00246903

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Name Class

WBVar00246903EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00246903
Other_namesnp_Y34D9A[1]
Y34D9A.3e.1:c.1009+520dup
Y34D9A.3f.1:c.790+520dup
Y34D9A.3b.1:c.790+520dup
Y34D9A.3a.1:c.1009+520dup
HGVSgCHROMOSOME_I:g.1038233dup
Sequence_detailsSMapS_parentSequenceY34D9A
Flanking_sequencesccagattttttgtgaaagctgataattccgacatttttcgcacgtttaaaccggaaaaaaatggaaaaaacgcgaaaagtcaatagaaattagctacagtaaccttaaaggcgcacacttaaaaccttaaatcctagattttcgttgcgagacccgtaggtccatttaaatctttttttgccatttttttatcgattttcgcccaaaatcgtcgtttttacccacc
Mapping_targetY34D9A
Type_of_mutationInsertionA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00021329
TranscriptY34D9A.3f.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY34D9A.3f.1:c.790+520dup
Intron_number8/13
Y34D9A.3e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY34D9A.3e.1:c.1009+520dup
Intron_number9/14
Y34D9A.3b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY34D9A.3b.1:c.790+520dup
Intron_number6/10
Y34D9A.3a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY34D9A.3a.1:c.1009+520dup
Intron_number9/14
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.9221 VarI1=A
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_Y34D9.1
[20040130 db] this Allele was previously named snp_Y34D9.1
[20090224 db] this Variation was previously named snp_Y34D9[1]
[20090224 db] original Wicks name : Y34D9A:19961..20887@149 Psnp=0.9221 VarI1=A
[20090224 db] original Wicks id : eam51d10.s1@85,a,59
[20090224 db] Snip-SNP
MethodSNP_Wicks