WormBase Tree Display for Variation: WBVar00246903
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WBVar00246903 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00246903 | |||
Other_name | snp_Y34D9A[1] | ||||
Y34D9A.3e.1:c.1009+520dup | |||||
Y34D9A.3f.1:c.790+520dup | |||||
Y34D9A.3b.1:c.790+520dup | |||||
Y34D9A.3a.1:c.1009+520dup | |||||
HGVSg | CHROMOSOME_I:g.1038233dup | ||||
Sequence_details | SMap | S_parent | Sequence | Y34D9A | |
Flanking_sequences | ccagattttttgtgaaagctgataa | ttccgacatttttcgcacgtttaaaccggaaaaaaatggaaaaaacgcgaaaagtcaatagaaattagctacagtaaccttaaaggcgcacacttaaaaccttaaatcctagattttcgttgcgagacccgtaggtccatttaaatctttttttgccatttttttatcgattttcgcccaaaatcgtcgtttttacccacc | |||
Mapping_target | Y34D9A | ||||
Type_of_mutation | Insertion | A | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00021329 | |||
Transcript | Y34D9A.3f.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y34D9A.3f.1:c.790+520dup | ||||
Intron_number | 8/13 | ||||
Y34D9A.3e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y34D9A.3e.1:c.1009+520dup | ||||
Intron_number | 9/14 | ||||
Y34D9A.3b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y34D9A.3b.1:c.790+520dup | ||||
Intron_number | 6/10 | ||||
Y34D9A.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y34D9A.3a.1:c.1009+520dup | ||||
Intron_number | 9/14 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9221 VarI1=A | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_Y34D9.1 | |||||
[20040130 db] this Allele was previously named snp_Y34D9.1 | |||||
[20090224 db] this Variation was previously named snp_Y34D9[1] | |||||
[20090224 db] original Wicks name : Y34D9A:19961..20887@149 Psnp=0.9221 VarI1=A | |||||
[20090224 db] original Wicks id : eam51d10.s1@85,a,59 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |