WormBase Tree Display for Variation: WBVar00246848
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| WBVar00246848 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00246848 | |||
| Other_name | snp_Y22D7AL[2] | ||||
| cewivar00021278 | |||||
| Y22D7AL.9.1:c.1995-227A>G | |||||
| Y22D7AL.9.2:c.1995-227A>G | |||||
| HGVSg | CHROMOSOME_III:g.1608392T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | Y22D7AL | |
| Flanking_sequences | cgctgtaaacttacaaagaaggttt | cagggtaaaatttaacgaggaatttgaatttttacatgaaaatctgcaaaaatgaattttaatacaattttcctgacgatgaagtcataaaaattcattttttgacctttcaactttagttttatgaattttaactaacaaattcagattcagcacccaattttacctctagacacac | |||
| Mapping_target | Y22D7AL | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (31) | |||||
| Analysis | SNP_Wicks | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00021247 | |||
| Transcript | Y22D7AL.9.2 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y22D7AL.9.2:c.1995-227A>G | ||||
| Intron_number | 7/10 | ||||
| Y22D7AL.9.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y22D7AL.9.1:c.1995-227A>G | ||||
| Intron_number | 7/11 | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.9328 VarS=CT | ||||
| Enzymes. Bristol-specific: [Asp700I,BbvAI,MroXI,PdmI,SynII,XmnI]. CB4856-specific [none]. | |||||
| [20040130 db] this Locus was previously named snp_Y22D7AL.2 | |||||
| [20040130 db] this Allele was previously named snp_Y22D7AL.2 | |||||
| [20090224 db] original Wicks name : Y22D7AL:31907..32469@371 Psnp=0.9328 VarS=CT | |||||
| [20090224 db] original Wicks id : hq64h11.s1@146,c,47 | |||||
| [20090224 db] Snip-SNP | |||||
| Method | SNP_Wicks |
