WormBase Tree Display for Variation: WBVar00246650

WBVar00246650 Name: Public_name: WBVar00246650
    Other_name: snp_W06E11[2]
      haw139327
      cewivar00146677
      C09F5.2a.2:c.-163C>T
      C09F5.2a.1:c.-86-77C>T
    HGVSg: CHROMOSOME_III:g.647411C>T
  Sequence_details: SMap: S_parent: Sequence: W06E11
    Flanking_sequences: accccctccgacgcacgttcgagtg cccttcctaacagtctaactctccc
    Mapping_target: W06E11
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain (11)
    Laboratory: AX
    Person: WBPerson4037
    Analysis: SNP_Wicks
      WGS_De_Bono
      WGS_Yanai
      Million_mutation_project_reanalysis
    History: Acquires_merge: WBVar00559192
        WBVar01254841
        WBVar01389284
    Status: Live
  Affects: Gene: WBGene00015648
      WBGene00305643
      WBGene00305644
    Transcript: W06E11.9
      C09F5.2a.2 VEP_consequence: 5_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: C09F5.2a.2:c.-163C>T
        cDNA_position: 65
        Exon_number: 1/8
      W06E11.8
      C09F5.2a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: C09F5.2a.1:c.-86-77C>T
        Intron_number: 2/9
  Reference: WBPaper00038208
    WBPaper00004703
    WBPaper00037807
  Remark: Predicted SNP: Psnp=0.9430 VarS=CT
    Enzymes. Bristol-specific: [AocII,Bka1125I,Bme1580I,BmyI,BseSI,BsoCI,Bsp1286I,BspLS2I,BstZ15I,HpyF36IV,HpyF47I,Mlu40I,NspII,SduI,TseAI,Uba1362I]. CB4856-specific [none].
    [20040130 db] this Locus was previously named snp_W06E11.2
    [20040130 db] this Allele was previously named snp_W06E11.2
    [20090224 db] original Wicks name : W06E11:13592..14516@451 Psnp=0.9430 VarS=CT
    [20090224 db] original Wicks id : eam52a07.s1@401,t,62
    [20090224 db] Snip-SNP
  Method: SNP_Wicks