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WormBase Tree Display for Variation: WBVar00246613

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Name Class

WBVar00246613NamePublic_nameWBVar00246613
Other_namesnp_W04A8[2]
cewivar00136208
W04A8.7b.1:c.1675-446C>G
W04A8.7a.1:c.1675-446C>G
HGVSgCHROMOSOME_I:g.13868357C>G
Sequence_detailsSMapS_parentSequenceW04A8
Flanking_sequencesaccactacagtaccccgactatatcctacactaaccctaactcgctatcc
Mapping_targetW04A8
Type_of_mutationSubstitutionCG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004600From_analysisMillion_mutation_project_reanalysis
WBStrain00004602From_analysisSNP_Wicks
WGS_De_Bono
Million_mutation_project_reanalysis
LaboratoryAX
AnalysisSNP_Wicks
WGS_De_Bono
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar01355358
StatusLive
AffectsGeneWBGene00006382
TranscriptW04A8.7b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScW04A8.7b.1:c.1675-446C>G
Intron_number5/15
W04A8.7a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScW04A8.7a.1:c.1675-446C>G
Intron_number6/16
ReferenceWBPaper00004703
WBPaper00037807
RemarkPredicted SNP: Psnp=0.8657 VarS=CG
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_W04A8.2
[20040130 db] this Allele was previously named snp_W04A8.2
[20090224 db] original Wicks name : W04A8:32932..33555@211 Psnp=0.8657 VarS=CG
[20090224 db] original Wicks id : vd50d08.s1@563,g,38
MethodSNP_Wicks