WormBase Tree Display for Variation: WBVar00246613
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WBVar00246613 | Name | Public_name | WBVar00246613 | ||
---|---|---|---|---|---|
Other_name | snp_W04A8[2] | ||||
cewivar00136208 | |||||
W04A8.7b.1:c.1675-446C>G | |||||
W04A8.7a.1:c.1675-446C>G | |||||
HGVSg | CHROMOSOME_I:g.13868357C>G | ||||
Sequence_details | SMap | S_parent | Sequence | W04A8 | |
Flanking_sequences | accactacagtaccccgactatatc | ctacactaaccctaactcgctatcc | |||
Mapping_target | W04A8 | ||||
Type_of_mutation | Substitution | C | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004602 | From_analysis | SNP_Wicks | |||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | AX | ||||
Analysis | SNP_Wicks | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01355358 | |||
Status | Live | ||||
Affects | Gene | WBGene00006382 | |||
Transcript | W04A8.7b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | W04A8.7b.1:c.1675-446C>G | ||||
Intron_number | 5/15 | ||||
W04A8.7a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | W04A8.7a.1:c.1675-446C>G | ||||
Intron_number | 6/16 | ||||
Reference | WBPaper00004703 | ||||
WBPaper00037807 | |||||
Remark | Predicted SNP: Psnp=0.8657 VarS=CG | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_W04A8.2 | |||||
[20040130 db] this Allele was previously named snp_W04A8.2 | |||||
[20090224 db] original Wicks name : W04A8:32932..33555@211 Psnp=0.8657 VarS=CG | |||||
[20090224 db] original Wicks id : vd50d08.s1@563,g,38 | |||||
Method | SNP_Wicks |