WormBase Tree Display for Variation: WBVar00246501
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| WBVar00246501 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00246501 | |||
| Other_name | snp_T27D12[1] | ||||
| T27D12.2f.1:c.2082+76_2082+77insAACG | |||||
| T27D12.2d.1:c.2265+76_2265+77insAACG | |||||
| T27D12.2g.1:c.2115+76_2115+77insAACG | |||||
| T27D12.2c.1:c.2451+76_2451+77insAACG | |||||
| T27D12.2e.1:c.2271+76_2271+77insAACG | |||||
| T27D12.2b.1:c.2238+76_2238+77insAACG | |||||
| T27D12.2a.1:c.2250+76_2250+77insAACG | |||||
| HGVSg | CHROMOSOME_II:g.11847645_11847646insCGTT | ||||
| Sequence_details | SMap | S_parent | Sequence | T27D12 | |
| Flanking_sequences | agtaatgtatgattactatagggtt | ggaagtaatgcagtagtattgtagt | |||
| Mapping_target | T27D12 | ||||
| Type_of_mutation | Insertion | CGTT | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| Analysis | SNP_Wicks | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00000528 | |||
| Transcript | T27D12.2b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T27D12.2b.1:c.2238+76_2238+77insAACG | ||||
| Intron_number | 14/18 | ||||
| T27D12.2a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T27D12.2a.1:c.2250+76_2250+77insAACG | ||||
| Intron_number | 14/18 | ||||
| T27D12.2f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T27D12.2f.1:c.2082+76_2082+77insAACG | ||||
| Intron_number | 12/15 | ||||
| T27D12.2c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T27D12.2c.1:c.2451+76_2451+77insAACG | ||||
| Intron_number | 14/17 | ||||
| T27D12.2d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T27D12.2d.1:c.2265+76_2265+77insAACG | ||||
| Intron_number | 12/15 | ||||
| T27D12.2g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T27D12.2g.1:c.2115+76_2115+77insAACG | ||||
| Intron_number | 13/16 | ||||
| T27D12.2e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T27D12.2e.1:c.2271+76_2271+77insAACG | ||||
| Intron_number | 15/19 | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.8227 VarI4=CGTT | ||||
| Enzymes. SNP detectable only by sequencing. | |||||
| [20040130 db] this Locus was previously named snp_T27D12.1 | |||||
| [20040130 db] this Allele was previously named snp_T27D12.1 | |||||
| [20090224 db] original Wicks name : T27D12:18224..19097@300 Psnp=0.8227 VarI4=CGTT | |||||
| [20090224 db] original Wicks id : vr79b08.s1@510,t,38 | |||||
| Method | SNP_Wicks |
