WormBase Tree Display for Variation: WBVar00246104
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WBVar00246104 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00246104 | |||
Other_name | snp_T06A4[1] | ||||
T06A4.1b.1:c.1683+186_1683+187insGT | |||||
T06A4.1a.2:c.1143+186_1143+187insGT | |||||
T06A4.1a.1:c.1143+186_1143+187insGT | |||||
HGVSg | CHROMOSOME_I:g.775758_775759insGT | ||||
Sequence_details | SMap | S_parent | Sequence | T06A4 | |
Flanking_sequences | cttaggctcagacttcggcttaggc | ttaggcttagaattaggcttagttt | |||
Mapping_target | T06A4 | ||||
Type_of_mutation | Insertion | GT | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00020281 | |||
Transcript | T06A4.1b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | T06A4.1b.1:c.1683+186_1683+187insGT | ||||
Intron_number | 10/10 | ||||
T06A4.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T06A4.1a.1:c.1143+186_1143+187insGT | ||||
Intron_number | 10/11 | ||||
T06A4.1a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T06A4.1a.2:c.1143+186_1143+187insGT | ||||
Intron_number | 6/7 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.6214 VarI2=GT | ||||
Enzymes. Bristol-specific: [Bpu10I,BpuDI,BscPI,Bst295I,BstDEI,BstJZ301I,CviJI,CviKI,CviLI,CviMI,CviNI,CviOI,CviTI,DdeI,HpyCH4II,HpyF11I,HpyF13II,HpyF19I,HpyF21I,HpyF22II,HpyF24II,HpyF25I,HpyF27I,HpyF30II,HpyF32I,HpyF34I,HpyF37I,HpyF3I,HpyF41II,HpyF4II,HpyF59I,HpyF5I,HpyF60II,HpyF64V,HpyF66II,HpyF67I,HpyF68II,HpyF6III,HpyF70I,HpyF72II,HpyF7I,HpyF9II,HpyHPK5I]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_T06A4.1 | |||||
[20040130 db] this Allele was previously named snp_T06A4.1 | |||||
[20090224 db] original Wicks name : T06A4:15846..16743@138 Psnp=0.6214 VarI2=GT | |||||
[20090224 db] original Wicks id : eam61b11.s1@694,t,32 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |