Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00246104

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00246104EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00246104
Other_namesnp_T06A4[1]
T06A4.1b.1:c.1683+186_1683+187insGT
T06A4.1a.2:c.1143+186_1143+187insGT
T06A4.1a.1:c.1143+186_1143+187insGT
HGVSgCHROMOSOME_I:g.775758_775759insGT
Sequence_detailsSMapS_parentSequenceT06A4
Flanking_sequencescttaggctcagacttcggcttaggcttaggcttagaattaggcttagttt
Mapping_targetT06A4
Type_of_mutationInsertionGT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00020281
TranscriptT06A4.1b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScT06A4.1b.1:c.1683+186_1683+187insGT
Intron_number10/10
T06A4.1a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScT06A4.1a.1:c.1143+186_1143+187insGT
Intron_number10/11
T06A4.1a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScT06A4.1a.2:c.1143+186_1143+187insGT
Intron_number6/7
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.6214 VarI2=GT
Enzymes. Bristol-specific: [Bpu10I,BpuDI,BscPI,Bst295I,BstDEI,BstJZ301I,CviJI,CviKI,CviLI,CviMI,CviNI,CviOI,CviTI,DdeI,HpyCH4II,HpyF11I,HpyF13II,HpyF19I,HpyF21I,HpyF22II,HpyF24II,HpyF25I,HpyF27I,HpyF30II,HpyF32I,HpyF34I,HpyF37I,HpyF3I,HpyF41II,HpyF4II,HpyF59I,HpyF5I,HpyF60II,HpyF64V,HpyF66II,HpyF67I,HpyF68II,HpyF6III,HpyF70I,HpyF72II,HpyF7I,HpyF9II,HpyHPK5I]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_T06A4.1
[20040130 db] this Allele was previously named snp_T06A4.1
[20090224 db] original Wicks name : T06A4:15846..16743@138 Psnp=0.6214 VarI2=GT
[20090224 db] original Wicks id : eam61b11.s1@694,t,32
[20090224 db] Snip-SNP
MethodSNP_Wicks