WormBase Tree Display for Variation: WBVar00245974
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WBVar00245974 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00245974 | |||
Other_name | snp_R166[6] | ||||
cewivar00094363 | |||||
R166.4.1:c.54+137C>G | |||||
HGVSg | CHROMOSOME_II:g.10541795G>C | ||||
Sequence_details | SMap | S_parent | Sequence | R166 | |
Flanking_sequences | aaaaacgggaattcccgttcccgtgaaaattttaaaaacgggaattcccgttcccgtgaaaattttaaaaacgggaattcccgttcccgt | aaaattttaaaaacgggaattcccgttcccgtgaaaattttaaaaacgggaattcccgttcccgtgaaaacaccccaaaaacgggacaacgggaaaaacgggaaacgggaa | |||
Mapping_target | R166 | ||||
Type_of_mutation | Substitution | G | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004602 | From_analysis | SNP_Wicks | |||
WBStrain00024204 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00004185 | |||
Transcript | R166.4.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | R166.4.1:c.54+137C>G | ||||
Intron_number | 2/5 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9427 VarS=CG | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_R166.6 | |||||
[20040130 db] this Allele was previously named snp_R166.6 | |||||
[20090224 db] original Wicks name : R166:14310..15214@190 Psnp=0.9427 VarS=CG | |||||
[20090224 db] original Wicks id : eam48e11.s1@200,c,59 | |||||
Method | SNP_Wicks |