WormBase Tree Display for Variation: WBVar00245827
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WBVar00245827 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00245827 | |||
Other_name | snp_R06A4[1] | ||||
R06A4.9a.1:c.1265_1266insT | |||||
R06A4.9b.1:c.650_651insT | |||||
R06A4.9c.1:c.*919_*920insT | |||||
CE21113:p.Asp423ArgfsTer4 | |||||
CE48640:p.Asp218ArgfsTer4 | |||||
HGVSg | CHROMOSOME_II:g.14360274_14360275insT | ||||
Sequence_details | SMap | S_parent | Sequence | R06A4 | |
Flanking_sequences | agttttgggccagaaatcgaccagg | cgacactgttgaagacatttttgga | |||
Mapping_target | R06A4 | ||||
Type_of_mutation | Insertion | T | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00011051 | |||
Transcript | R06A4.9b.1 | VEP_consequence | frameshift_variant | ||
VEP_impact | HIGH | ||||
HGVSc | R06A4.9b.1:c.650_651insT | ||||
HGVSp | CE48640:p.Asp218ArgfsTer4 | ||||
cDNA_position | 650-651 | ||||
CDS_position | 650-651 | ||||
Protein_position | 217 | ||||
Exon_number | 3/4 | ||||
Codon_change | ggc/ggTc | ||||
Amino_acid_change | G/GX | ||||
R06A4.9a.1 | VEP_consequence | frameshift_variant | |||
VEP_impact | HIGH | ||||
HGVSc | R06A4.9a.1:c.1265_1266insT | ||||
HGVSp | CE21113:p.Asp423ArgfsTer4 | ||||
cDNA_position | 1386-1387 | ||||
CDS_position | 1265-1266 | ||||
Protein_position | 422 | ||||
Exon_number | 7/9 | ||||
Codon_change | ggc/ggTc | ||||
Amino_acid_change | G/GX | ||||
R06A4.9c.1 | VEP_consequence | 3_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | R06A4.9c.1:c.*919_*920insT | ||||
cDNA_position | 1700-1701 | ||||
Exon_number | 7/8 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.4688 VarI1=T | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_R06A4.1 | |||||
[20040130 db] this Allele was previously named snp_R06A4.1 | |||||
[20090224 db] original Wicks name : R06A4:8921..9969@501 Psnp=0.4688 VarI1=T | |||||
[20090224 db] original Wicks id : eam44f12.s1@430,t,29 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |