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WormBase Tree Display for Variation: WBVar00245827

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Name Class

WBVar00245827EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00245827
Other_namesnp_R06A4[1]
R06A4.9a.1:c.1265_1266insT
R06A4.9b.1:c.650_651insT
R06A4.9c.1:c.*919_*920insT
CE21113:p.Asp423ArgfsTer4
CE48640:p.Asp218ArgfsTer4
HGVSgCHROMOSOME_II:g.14360274_14360275insT
Sequence_detailsSMapS_parentSequenceR06A4
Flanking_sequencesagttttgggccagaaatcgaccaggcgacactgttgaagacatttttgga
Mapping_targetR06A4
Type_of_mutationInsertionT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00011051
TranscriptR06A4.9b.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScR06A4.9b.1:c.650_651insT
HGVSpCE48640:p.Asp218ArgfsTer4
cDNA_position650-651
CDS_position650-651
Protein_position217
Exon_number3/4
Codon_changeggc/ggTc
Amino_acid_changeG/GX
R06A4.9a.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScR06A4.9a.1:c.1265_1266insT
HGVSpCE21113:p.Asp423ArgfsTer4
cDNA_position1386-1387
CDS_position1265-1266
Protein_position422
Exon_number7/9
Codon_changeggc/ggTc
Amino_acid_changeG/GX
R06A4.9c.1VEP_consequence3_prime_UTR_variant
VEP_impactMODIFIER
HGVScR06A4.9c.1:c.*919_*920insT
cDNA_position1700-1701
Exon_number7/8
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.4688 VarI1=T
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_R06A4.1
[20040130 db] this Allele was previously named snp_R06A4.1
[20090224 db] original Wicks name : R06A4:8921..9969@501 Psnp=0.4688 VarI1=T
[20090224 db] original Wicks id : eam44f12.s1@430,t,29
[20090224 db] Snip-SNP
MethodSNP_Wicks