WormBase Tree Display for Variation: WBVar00245519
expand all nodes | collapse all nodes | view schema
WBVar00245519 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00245519 | |||
Other_name | snp_K08D9[5] | ||||
cewivar00227614 | |||||
K08D9.3f.1:c.890-304G>A | |||||
K08D9.3a.1:c.890-304G>A | |||||
HGVSg | CHROMOSOME_V:g.3218649G>A | ||||
Sequence_details | SMap | S_parent | Sequence | K08D9 | |
Flanking_sequences | ttttttgtagatcaaatcgtaatgg | acagcccctggcaccgcgtggaatt | |||
Mapping_target | K08D9 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00000168 | |||
Transcript | K08D9.3a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | K08D9.3a.1:c.890-304G>A | ||||
Intron_number | 6/9 | ||||
K08D9.3f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | K08D9.3f.1:c.890-304G>A | ||||
Intron_number | 6/9 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9430 VarS=AG | ||||
Enzymes. Bristol-specific: [BsmFI,BspLU11III,BstOZ616I]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_K08D9.5 | |||||
[20040130 db] this Allele was previously named snp_K08D9.5 | |||||
[20090224 db] original Wicks name : K08D9:19772..20714@236 Psnp=0.9430 VarS=AG | |||||
[20090224 db] original Wicks id : eam67b09.s1@165,a,62 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |