Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00245438

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00245438EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00245438
Other_namesnp_K05B2[4]
K05B2.2b.4:c.-336-305A>C
K05B2.2b.3:c.-564-305A>C
K05B2.2a.1:c.148-305A>C
K05B2.2b.2:c.-336-305A>C
K05B2.2a.2:c.148-305A>C
HGVSgCHROMOSOME_X:g.4907951A>C
Sequence_detailsSMapS_parentSequenceK05B2
Flanking_sequencesttcgtttttttattcggaaaaaaaaatgaaaatagccatataactgcaat
Mapping_targetK05B2
Type_of_mutationSubstitutionAC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00019403
TranscriptK05B2.2b.4VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScK05B2.2b.4:c.-336-305A>C
Intron_number1/8
K05B2.2a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScK05B2.2a.1:c.148-305A>C
Intron_number2/8
K05B2.2b.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScK05B2.2b.2:c.-336-305A>C
Intron_number2/9
K05B2.2b.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScK05B2.2b.3:c.-564-305A>C
Intron_number1/8
K05B2.2a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScK05B2.2a.2:c.148-305A>C
Intron_number3/9
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.9427 VarS=AC
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_K05B2.4
[20040130 db] this Allele was previously named snp_K05B2.4
[20090224 db] original Wicks name : K05B2:6185..7057@776 Psnp=0.9427 VarS=AC
[20090224 db] original Wicks id : yw97a03.s1@322,c,59
[20090224 db] Snip-SNP
MethodSNP_Wicks