WormBase Tree Display for Variation: WBVar00245438
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WBVar00245438 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00245438 | |||
Other_name | snp_K05B2[4] | ||||
K05B2.2b.4:c.-336-305A>C | |||||
K05B2.2b.3:c.-564-305A>C | |||||
K05B2.2a.1:c.148-305A>C | |||||
K05B2.2b.2:c.-336-305A>C | |||||
K05B2.2a.2:c.148-305A>C | |||||
HGVSg | CHROMOSOME_X:g.4907951A>C | ||||
Sequence_details | SMap | S_parent | Sequence | K05B2 | |
Flanking_sequences | ttcgtttttttattcggaaaaaaaa | atgaaaatagccatataactgcaat | |||
Mapping_target | K05B2 | ||||
Type_of_mutation | Substitution | A | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00019403 | |||
Transcript | K05B2.2b.4 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | K05B2.2b.4:c.-336-305A>C | ||||
Intron_number | 1/8 | ||||
K05B2.2a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | K05B2.2a.1:c.148-305A>C | ||||
Intron_number | 2/8 | ||||
K05B2.2b.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | K05B2.2b.2:c.-336-305A>C | ||||
Intron_number | 2/9 | ||||
K05B2.2b.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | K05B2.2b.3:c.-564-305A>C | ||||
Intron_number | 1/8 | ||||
K05B2.2a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | K05B2.2a.2:c.148-305A>C | ||||
Intron_number | 3/9 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9427 VarS=AC | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_K05B2.4 | |||||
[20040130 db] this Allele was previously named snp_K05B2.4 | |||||
[20090224 db] original Wicks name : K05B2:6185..7057@776 Psnp=0.9427 VarS=AC | |||||
[20090224 db] original Wicks id : yw97a03.s1@322,c,59 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |