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WormBase Tree Display for Variation: WBVar00245381

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Name Class

WBVar00245381NamePublic_nameWBVar00245381
Other_namesnp_K01A11[5]
haw142838
cewivar00196122
K01A11.4b.1:c.-126-89C>T
K01A11.4a.1:c.304-89C>T
HGVSgCHROMOSOME_III:g.3443327G>A
Sequence_detailsSMapS_parentSequenceK01A11
Flanking_sequencesatcataggtggatgtaggcaaagtagcggtcgtaggcggtcataagcgag
Mapping_targetK01A11
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00562703
StatusLive
AffectsGeneWBGene00004976
TranscriptK01A11.4a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScK01A11.4a.1:c.304-89C>T
Intron_number4/16
K01A11.4b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScK01A11.4b.1:c.-126-89C>T
Intron_number2/14
ReferenceWBPaper00038208
WBPaper00004703
RemarkPredicted SNP: Psnp=0.8806 VarS=AG
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_K01A11.5
[20040130 db] this Allele was previously named snp_K01A11.5
[20090224 db] original Wicks name : K01A11:24219..25081@464 Psnp=0.8806 VarS=AG
[20090224 db] original Wicks id : vl29f12.s1@389,a,39
MethodSNP_Wicks