WormBase Tree Display for Variation: WBVar00245381
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WBVar00245381 | Name | Public_name | WBVar00245381 | ||
---|---|---|---|---|---|
Other_name | snp_K01A11[5] | ||||
haw142838 | |||||
cewivar00196122 | |||||
K01A11.4b.1:c.-126-89C>T | |||||
K01A11.4a.1:c.304-89C>T | |||||
HGVSg | CHROMOSOME_III:g.3443327G>A | ||||
Sequence_details | SMap | S_parent | Sequence | K01A11 | |
Flanking_sequences | atcataggtggatgtaggcaaagta | gcggtcgtaggcggtcataagcgag | |||
Mapping_target | K01A11 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00562703 | |||
Status | Live | ||||
Affects | Gene | WBGene00004976 | |||
Transcript | K01A11.4a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | K01A11.4a.1:c.304-89C>T | ||||
Intron_number | 4/16 | ||||
K01A11.4b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | K01A11.4b.1:c.-126-89C>T | ||||
Intron_number | 2/14 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
Remark | Predicted SNP: Psnp=0.8806 VarS=AG | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_K01A11.5 | |||||
[20040130 db] this Allele was previously named snp_K01A11.5 | |||||
[20090224 db] original Wicks name : K01A11:24219..25081@464 Psnp=0.8806 VarS=AG | |||||
[20090224 db] original Wicks id : vl29f12.s1@389,a,39 | |||||
Method | SNP_Wicks |