WormBase Tree Display for Variation: WBVar00244466
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WBVar00244466 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00244466 | |||
Other_name | snp_F29C12[5] | ||||
F29C12.3b.1:c.3537+78_3537+79del | |||||
F29C12.3c.1:c.1101+78_1101+79del | |||||
F29C12.3a.1:c.3531+78_3531+79del | |||||
HGVSg | CHROMOSOME_II:g.13103667_13103668del | ||||
Sequence_details | SMap | S_parent | Sequence | F29C12 | |
Flanking_sequences | actttcgaaaaatgcatgcgttttt | ttaaaacaattttctacacaaatga | |||
Mapping_target | F29C12 | ||||
Type_of_mutation | Deletion | TT | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00009245 | |||
Transcript | F29C12.3b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F29C12.3b.1:c.3537+78_3537+79del | ||||
Intron_number | 12/17 | ||||
F29C12.3c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F29C12.3c.1:c.1101+78_1101+79del | ||||
Intron_number | 2/6 | ||||
F29C12.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F29C12.3a.1:c.3531+78_3531+79del | ||||
Intron_number | 12/17 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.4689 VarD2=TT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_F29C12.5 | |||||
[20040130 db] this Allele was previously named snp_F29C12.5 | |||||
[20090224 db] original Wicks name : F29C12:3405..4359@214 Psnp=0.4689 VarD2=TT | |||||
[20090224 db] original Wicks id : eam53h07.s1@668,-,29 | |||||
Method | SNP_Wicks |