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WormBase Tree Display for Variation: WBVar00244466

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Name Class

WBVar00244466EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00244466
Other_namesnp_F29C12[5]
F29C12.3b.1:c.3537+78_3537+79del
F29C12.3c.1:c.1101+78_1101+79del
F29C12.3a.1:c.3531+78_3531+79del
HGVSgCHROMOSOME_II:g.13103667_13103668del
Sequence_detailsSMapS_parentSequenceF29C12
Flanking_sequencesactttcgaaaaatgcatgcgtttttttaaaacaattttctacacaaatga
Mapping_targetF29C12
Type_of_mutationDeletionTT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00009245
TranscriptF29C12.3b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF29C12.3b.1:c.3537+78_3537+79del
Intron_number12/17
F29C12.3c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF29C12.3c.1:c.1101+78_1101+79del
Intron_number2/6
F29C12.3a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF29C12.3a.1:c.3531+78_3531+79del
Intron_number12/17
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.4689 VarD2=TT
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_F29C12.5
[20040130 db] this Allele was previously named snp_F29C12.5
[20090224 db] original Wicks name : F29C12:3405..4359@214 Psnp=0.4689 VarD2=TT
[20090224 db] original Wicks id : eam53h07.s1@668,-,29
MethodSNP_Wicks