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WormBase Tree Display for Variation: WBVar00244443

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Name Class

WBVar00244443EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00244443
Other_namesnp_F28D1[1]
CE05743:p.Pro132ThrfsTer19
F28D1.3.1:c.394_395del
HGVSgCHROMOSOME_IV:g.12380549_12380550del
Sequence_detailsSMapS_parentSequenceF28D1
Flanking_sequencesatacaatcttccagttctgattgacacatggtggatctggatgcaagcgt
Mapping_targetF28D1
Type_of_mutationDeletionCC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00009213
TranscriptF28D1.3.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScF28D1.3.1:c.394_395del
HGVSpCE05743:p.Pro132ThrfsTer19
cDNA_position414-415
CDS_position394-395
Protein_position132
Exon_number3/4
Codon_changeCCa/a
Amino_acid_changeP/X
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.7424 VarD2=CC
Enzymes. Bristol-specific: [AccB7I,AcpII,Asp10HII,BasI,Bsc107I,Bsc4I,Bse23I,BseLI,BsiYI,BslI,BsmYI,Esp1396I,PflMI,Van91I]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_F28D1.1
[20040130 db] this Allele was previously named snp_F28D1.1
[20090224 db] original Wicks name : F28D1:10231..11146@275 Psnp=0.7424 VarD2=CC
[20090224 db] original Wicks id : vc89d06.s1@206,-,35
[20090224 db] Snip-SNP
MethodSNP_Wicks