WormBase Tree Display for Variation: WBVar00244443
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WBVar00244443 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00244443 | |||
Other_name | snp_F28D1[1] | ||||
CE05743:p.Pro132ThrfsTer19 | |||||
F28D1.3.1:c.394_395del | |||||
HGVSg | CHROMOSOME_IV:g.12380549_12380550del | ||||
Sequence_details | SMap | S_parent | Sequence | F28D1 | |
Flanking_sequences | atacaatcttccagttctgattgac | acatggtggatctggatgcaagcgt | |||
Mapping_target | F28D1 | ||||
Type_of_mutation | Deletion | CC | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00009213 | |||
Transcript | F28D1.3.1 | VEP_consequence | frameshift_variant | ||
VEP_impact | HIGH | ||||
HGVSc | F28D1.3.1:c.394_395del | ||||
HGVSp | CE05743:p.Pro132ThrfsTer19 | ||||
cDNA_position | 414-415 | ||||
CDS_position | 394-395 | ||||
Protein_position | 132 | ||||
Exon_number | 3/4 | ||||
Codon_change | CCa/a | ||||
Amino_acid_change | P/X | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.7424 VarD2=CC | ||||
Enzymes. Bristol-specific: [AccB7I,AcpII,Asp10HII,BasI,Bsc107I,Bsc4I,Bse23I,BseLI,BsiYI,BslI,BsmYI,Esp1396I,PflMI,Van91I]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_F28D1.1 | |||||
[20040130 db] this Allele was previously named snp_F28D1.1 | |||||
[20090224 db] original Wicks name : F28D1:10231..11146@275 Psnp=0.7424 VarD2=CC | |||||
[20090224 db] original Wicks id : vc89d06.s1@206,-,35 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |