WormBase Tree Display for Gene: WBGene00009213

WBGene00009213 SMap: S_parent: Sequence: F28D1
  Identity: Version: 2
    Name: CGC_name: thn-1
      Sequence_name: F28D1.3
      Molecular_name: F28D1.3
        F28D1.3.1
        CE05743
      Other_name: dod-2
        CELE_F28D1.3 Accession_evidence: NDB BX284604
      Public_name: thn-1
    DB_info: Database: AceView gene 4N143
        WormQTL gene WBGene00009213
        WormFlux gene WBGene00009213
        NDB locus_tag CELE_F28D1.3
        Panther gene CAEEL|WormBase=WBGene00009213|UniProtKB=Q19874
          family PTHR31013
        NCBI gene 185060
        RefSeq protein NM_069959.3
        TREEFAM TREEFAM_ID TF315390
        TrEMBL UniProtAcc Q19874
        UniProt_GCRP UniProtAcc Q19874
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 25 Aug 2004 11:43:00 WBPerson1971 Name_change: CGC_name: thn-1
                Other_name: dod-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: thn
    Allele (28)
    Strain: WBStrain00037650
    RNASeq_FPKM (74)
    GO_annotation: 00066199
      00066200
      00066201
      00066202
    Ortholog (52)
    Paralog: WBGene00009215 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00021999 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00009214 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
      WBGene00009858 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00021992 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00044285 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
    Structured_description: Automated_description: Involved in defense response to Gram-negative bacterium and innate immune response. Predicted to be located in extracellular region. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F28D1.3
    Corresponding_transcript: F28D1.3.1
    Other_sequence: GW411093.1
      CJC02222_1
      CBC11064_1
      PSC03641_1
    Associated_feature: WBsf019150
      WBsf019151
  Experimental_info: RNAi_result: WBRNAi00014047 Inferred_automatically: RNAi_primary
      WBRNAi00063154 Inferred_automatically: RNAi_primary
      WBRNAi00031526 Inferred_automatically: RNAi_primary
      WBRNAi00070069 Inferred_automatically: RNAi_primary
      WBRNAi00075932 Inferred_automatically: RNAi_primary
      WBRNAi00065095 Inferred_automatically: RNAi_primary
      WBRNAi00045828 Inferred_automatically: RNAi_primary
      WBRNAi00070160 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1012604
      Expr1149735
      Expr2017385
      Expr2035522
    Drives_construct: WBCnstr00032366
    Construct_product: WBCnstr00032366
    Microarray_results (16)
    Expression_cluster (286)
    Interaction (215)
    WBProcess: WBbiopr:00000039
  Map_info: Map: IV Position: 5.88467 Error: 0.00089
    Positive: Positive_clone: F28D1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005976
    WBPaper00028482
    WBPaper00030811
    WBPaper00039851
    WBPaper00042178
    WBPaper00042367
    WBPaper00044217
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene