WormBase Tree Display for Variation: WBVar00244078

WBVar00244078 Name: Public_name: WBVar00244078
    Other_name: snp_F09D1[2]
      cewivar00005795
      F09D1.1.1:c.1657-376T>C
    HGVSg: CHROMOSOME_II:g.2575279T>C
  Sequence_details: SMap: S_parent: Sequence: F33H12
    Flanking_sequences: aaaggtaaaggttgtccgtttggtt aagggtgagcctaagcctcctgcgg
    Mapping_target: F33H12
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00000032 From_analysis: Million_mutation_project_reanalysis
      WBStrain00004600 From_analysis: Million_mutation_project_reanalysis
      WBStrain00004602 From_analysis: SNP_Wicks
          WGS_De_Bono
          Million_mutation_project_reanalysis
      WBStrain00008273 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023072 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023191 From_analysis: Million_mutation_project_reanalysis
    Laboratory: AX
    Analysis: SNP_Wicks
      WGS_De_Bono
      Million_mutation_project_reanalysis
    History: Acquires_merge: WBVar01364339
    Status: Live
  Affects: Gene: WBGene00017280
    Transcript: F09D1.1.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F09D1.1.1:c.1657-376T>C
        Intron_number: 12/13
  Reference: WBPaper00004703
    WBPaper00037807
  Remark: Predicted SNP: Psnp=0.8806 VarS=CT
    Enzymes. Bristol-specific: [MseI,Tru1I,Tru9I]. CB4856-specific [none].
    [20040130 db] this Locus was previously named snp_F09D1.2
    [20040130 db] this Allele was previously named snp_F09D1.2
    [20090224 db] original Wicks name : F09D1:9554..10588@464 Psnp=0.8806 VarS=CT
    [20090224 db] original Wicks id : yy56f06.s1@399,c,39
    [20090224 db] Snip-SNP
  Method: SNP_Wicks