WormBase Tree Display for Gene: WBGene00017280
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| WBGene00017280 | SMap | S_parent | Sequence | F09D1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | usp-39 | Person_evidence | WBPerson260 | |||||
| Sequence_name | F09D1.1 | ||||||||
| Molecular_name | F09D1.1 | ||||||||
| F09D1.1.1 | |||||||||
| CE20660 | |||||||||
| Other_name | CELE_F09D1.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | usp-39 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 28 Sep 2012 14:29:00 | WBPerson2970 | Name_change | CGC_name | usp-39 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | usp | ||||||||
| Allele (440) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00033427 | ||||||||
| 00033428 | |||||||||
| 00033429 | |||||||||
| 00033430 | |||||||||
| 00033431 | |||||||||
| 00122703 | |||||||||
| 00122704 | |||||||||
| 00122705 | |||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00011216 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Predicted to enable cysteine-type deubiquitinase activity and zinc ion binding activity. Predicted to be located in nucleus. Expressed in tail. Is an ortholog of human USP39 (ubiquitin specific peptidase 39). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F09D1.1 | |||||||
| Corresponding_transcript | F09D1.1.1 | ||||||||
| Other_sequence (62) | |||||||||
| Associated_feature | WBsf644014 | ||||||||
| WBsf986977 | |||||||||
| WBsf220937 | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Chronogram1788 | ||||||||
| Expr5696 | |||||||||
| Expr1010775 | |||||||||
| Expr1037423 | |||||||||
| Expr1148077 | |||||||||
| Expr2017936 | |||||||||
| Expr2036072 | |||||||||
| Drives_construct | WBCnstr00003431 | ||||||||
| Construct_product | WBCnstr00016285 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (106) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | II | Position | -12.4744 | |||||
| Positive | Positive_clone | F09D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00010019 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041771 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
