WormBase Tree Display for Gene: WBGene00017280
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WBGene00017280 | SMap | S_parent | Sequence | F09D1 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | usp | |||||
Allele (440) | ||||||
RNASeq_FPKM (74) | ||||||
GO_annotation | 00033427 | |||||
00033428 | ||||||
00033429 | ||||||
00033430 | ||||||
00033431 | ||||||
00122703 | ||||||
00122704 | ||||||
00122705 | ||||||
Ortholog (42) | ||||||
Paralog | WBGene00011216 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||
Structured_description | Automated_description | Predicted to enable cysteine-type deubiquitinase activity and zinc ion binding activity. Predicted to be located in nucleus. Expressed in tail. Is an ortholog of human USP39 (ubiquitin specific peptidase 39). | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | F09D1.1 | ||||
Corresponding_transcript | F09D1.1.1 | |||||
Other_sequence (62) | ||||||
Associated_feature | WBsf644014 | |||||
WBsf986977 | ||||||
WBsf220937 | ||||||
Experimental_info | RNAi_result (12) | |||||
Expr_pattern | Chronogram1788 | |||||
Expr5696 | ||||||
Expr1010775 | ||||||
Expr1037423 | ||||||
Expr1148077 | ||||||
Expr2017936 | ||||||
Expr2036072 | ||||||
Drives_construct | WBCnstr00003431 | |||||
Construct_product | WBCnstr00016285 | |||||
Microarray_results (20) | ||||||
Expression_cluster (106) | ||||||
Interaction (11) | ||||||
Map_info | Map | II | Position | -12.4744 | ||
Positive | Positive_clone | F09D1 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference | WBPaper00010019 | |||||
WBPaper00038491 | ||||||
WBPaper00041771 | ||||||
WBPaper00055090 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |