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WormBase Tree Display for Variation: WBVar00243863

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Name Class

WBVar00243863NamePublic_nameWBVar00243863
Other_namesnp_C54G6[5]
haw113123
cewivar00067438
C54G6.3.1:c.393+337T>C
HGVSgCHROMOSOME_I:g.997586T>C
Sequence_detailsSMapS_parentSequenceC54G6
Flanking_sequencesctctcttttgaaggaacattgacttttccgttgaaatggataaaaaaatt
Mapping_targetC54G6
Type_of_mutationSubstitutionTC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (28)
LaboratoryAX
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00532988
WBVar01295140
StatusLive
AffectsGeneWBGene00016932
TranscriptC54G6.3.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC54G6.3.1:c.393+337T>C
Intron_number5/8
ReferenceWBPaper00038208
WBPaper00004703
WBPaper00037807
RemarkPredicted SNP: Psnp=0.9427 VarS=CT
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_C54G6.5
[20040130 db] this Allele was previously named snp_C54G6.5
[20090224 db] original Wicks name : C54G6:5915..6807@744 Psnp=0.9427 VarS=CT
[20090224 db] original Wicks id : eam61c08.s1@79,c,59
[20090224 db] Snip-SNP
MethodSNP_Wicks