WormBase Tree Display for Variation: WBVar00243803
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WBVar00243803 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00243803 | |||
Other_name | snp_C52D10[1] | ||||
cewivar00218739 | |||||
C52D10.3a.1:c.151-9T>C | |||||
C52D10.3b.1:c.151-9T>C | |||||
HGVSg | CHROMOSOME_IV:g.17180201T>C | ||||
Sequence_details | SMap | S_parent | Sequence | C52D10 | |
Flanking_sequences | tctatctaccagattcatcaaaaac | aattccagaatgtctccgcagtcat | |||
Mapping_target | C52D10 | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (13) | |||||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00016877 | |||
Transcript | C52D10.3a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C52D10.3a.1:c.151-9T>C | ||||
Intron_number | 2/3 | ||||
C52D10.3b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C52D10.3b.1:c.151-9T>C | ||||
Intron_number | 2/10 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.5508 VarS=CT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_C52D10.1 | |||||
[20040130 db] this Allele was previously named snp_C52D10.1 | |||||
[20090224 db] original Wicks name : C52D10:19476..20416@396 Psnp=0.5508 VarS=CT | |||||
[20090224 db] original Wicks id : eam60f05.s1@476,c,29 | |||||
Method | SNP_Wicks |