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WormBase Tree Display for Variation: WBVar00243803

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Name Class

WBVar00243803EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00243803
Other_namesnp_C52D10[1]
cewivar00218739
C52D10.3a.1:c.151-9T>C
C52D10.3b.1:c.151-9T>C
HGVSgCHROMOSOME_IV:g.17180201T>C
Sequence_detailsSMapS_parentSequenceC52D10
Flanking_sequencestctatctaccagattcatcaaaaacaattccagaatgtctccgcagtcat
Mapping_targetC52D10
Type_of_mutationSubstitutionTC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (13)
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00016877
TranscriptC52D10.3a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC52D10.3a.1:c.151-9T>C
Intron_number2/3
C52D10.3b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC52D10.3b.1:c.151-9T>C
Intron_number2/10
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.5508 VarS=CT
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_C52D10.1
[20040130 db] this Allele was previously named snp_C52D10.1
[20090224 db] original Wicks name : C52D10:19476..20416@396 Psnp=0.5508 VarS=CT
[20090224 db] original Wicks id : eam60f05.s1@476,c,29
MethodSNP_Wicks