WormBase Tree Display for Variation: WBVar00243698
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WBVar00243698 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00243698 | |||
Other_name | snp_C48D1[8] | ||||
C48D1.5f.1:c.466-2169dup | |||||
C48D1.5c.1:c.676-2169dup | |||||
C48D1.5e.1:c.544-2169dup | |||||
C48D1.5d.1:c.598-2169dup | |||||
HGVSg | CHROMOSOME_IV:g.13230620dup | ||||
Sequence_details | SMap | S_parent | Sequence | JC8 | |
Flanking_sequences | gaatagcaaaattctaaaaaaaaaa | tttcggaaaaccgaaaaacggaaaa | |||
Mapping_target | JC8 | ||||
Type_of_mutation | Insertion | A | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00008178 | |||
Transcript | C48D1.5e.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C48D1.5e.1:c.544-2169dup | ||||
Intron_number | 4/4 | ||||
C48D1.5c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C48D1.5c.1:c.676-2169dup | ||||
Intron_number | 6/6 | ||||
C48D1.5f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C48D1.5f.1:c.466-2169dup | ||||
Intron_number | 3/3 | ||||
C48D1.5d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C48D1.5d.1:c.598-2169dup | ||||
Intron_number | 5/6 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9221 VarI1=A | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_C48D1.8 | |||||
[20040130 db] this Allele was previously named snp_C48D1.8 | |||||
[20090224 db] original Wicks name : C48D1:37489..38413@189 Psnp=0.9221 VarI1=A | |||||
[20090224 db] original Wicks id : yw18f04.s1@126,a,59 | |||||
Method | SNP_Wicks |