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WormBase Tree Display for Variation: WBVar00243698

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Name Class

WBVar00243698EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00243698
Other_namesnp_C48D1[8]
C48D1.5f.1:c.466-2169dup
C48D1.5c.1:c.676-2169dup
C48D1.5e.1:c.544-2169dup
C48D1.5d.1:c.598-2169dup
HGVSgCHROMOSOME_IV:g.13230620dup
Sequence_detailsSMapS_parentSequenceJC8
Flanking_sequencesgaatagcaaaattctaaaaaaaaaatttcggaaaaccgaaaaacggaaaa
Mapping_targetJC8
Type_of_mutationInsertionA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00008178
TranscriptC48D1.5e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC48D1.5e.1:c.544-2169dup
Intron_number4/4
C48D1.5c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC48D1.5c.1:c.676-2169dup
Intron_number6/6
C48D1.5f.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC48D1.5f.1:c.466-2169dup
Intron_number3/3
C48D1.5d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC48D1.5d.1:c.598-2169dup
Intron_number5/6
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.9221 VarI1=A
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_C48D1.8
[20040130 db] this Allele was previously named snp_C48D1.8
[20090224 db] original Wicks name : C48D1:37489..38413@189 Psnp=0.9221 VarI1=A
[20090224 db] original Wicks id : yw18f04.s1@126,a,59
MethodSNP_Wicks