WormBase Tree Display for Variation: WBVar00243664
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WBVar00243664 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00243664 | |||
Other_name | snp_C47A10[2] | ||||
CE34474:p.Ile281del | |||||
C47A10.10.1:c.832_834del | |||||
HGVSg | CHROMOSOME_V:g.17792823_17792825del | ||||
Sequence_details | SMap | S_parent | Sequence | C47A10 | |
Flanking_sequences | ggaccccatgcattgatataataat | gcagatgaggtttgtggtgccctga | |||
Mapping_target | C47A10 | ||||
Type_of_mutation | Deletion | AAT | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00005493 | |||
Transcript | C47A10.10.1 | VEP_consequence | inframe_deletion | ||
VEP_impact | MODERATE | ||||
HGVSc | C47A10.10.1:c.832_834del | ||||
HGVSp | CE34474:p.Ile281del | ||||
cDNA_position | 832-834 | ||||
CDS_position | 832-834 | ||||
Protein_position | 278 | ||||
Exon_number | 3/3 | ||||
Codon_change | ATT/- | ||||
Amino_acid_change | I/- | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8956 VarD3=AAT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_C47A10.2 | |||||
[20040130 db] this Allele was previously named snp_C47A10.2 | |||||
[20090224 db] original Wicks name : C47A10:36274..37159@564 Psnp=0.8956 VarD3=AAT | |||||
[20090224 db] original Wicks id : yy43e04.s1@517,-,44 | |||||
Method | SNP_Wicks |