WormBase Tree Display for Variation: WBVar00242554
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WBVar00242554 | Name | Public_name | sa307 | ||
---|---|---|---|---|---|
Other_name | F22E12.4c.1:c.199_309+2del | ||||
F22E12.4b.3:c.973_1083+2del | |||||
F22E12.4a.1:c.973_1083+2del | |||||
F22E12.4e.1:c.745_855+2del | |||||
F22E12.4d.1:c.973_1083+2del | |||||
F22E12.4b.1:c.973_1083+2del | |||||
F22E12.4b.2:c.973_1083+2del | |||||
HGVSg | CHROMOSOME_V:g.10473776_10474018del | ||||
Sequence_details | SMap | S_parent | Sequence | Y32F6B | |
Flanking_sequences | aactccgctgacccaaaaattaattacaag | aagttggtggtacagtacccttgatgcagt | |||
Mapping_target | Y32F6B | ||||
Type_of_mutation | Deletion | ||||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004676 | ||||
WBStrain00004678 | |||||
WBStrain00022795 | |||||
WBStrain00040834 | |||||
WBStrain00040846 | |||||
Laboratory | JT | ||||
Status | Live | ||||
Affects | Gene | WBGene00001178 | |||
Transcript | F22E12.4b.3 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||
VEP_impact | HIGH | ||||
HGVSc | F22E12.4b.3:c.973_1083+2del | ||||
cDNA_position | 973-? | ||||
CDS_position | 973-? | ||||
Protein_position | 325-? | ||||
Intron_number | 5-6/10 | ||||
Exon_number | 5-6/11 | ||||
F22E12.4b.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F22E12.4b.2:c.973_1083+2del | ||||
cDNA_position | 979-? | ||||
CDS_position | 973-? | ||||
Protein_position | 325-? | ||||
Intron_number | 6-7/8 | ||||
Exon_number | 6-7/9 | ||||
F22E12.4a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F22E12.4a.1:c.973_1083+2del | ||||
cDNA_position | 981-? | ||||
CDS_position | 973-? | ||||
Protein_position | 325-? | ||||
Intron_number | 6-7/11 | ||||
Exon_number | 6-7/12 | ||||
F22E12.4b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F22E12.4b.1:c.973_1083+2del | ||||
cDNA_position | 981-? | ||||
CDS_position | 973-? | ||||
Protein_position | 325-? | ||||
Intron_number | 6-7/10 | ||||
Exon_number | 6-7/11 | ||||
F22E12.4c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F22E12.4c.1:c.199_309+2del | ||||
cDNA_position | 203-? | ||||
CDS_position | 199-? | ||||
Protein_position | 67-? | ||||
Intron_number | 3-4/8 | ||||
Exon_number | 3-4/9 | ||||
F22E12.4e.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F22E12.4e.1:c.745_855+2del | ||||
cDNA_position | 745-? | ||||
CDS_position | 745-? | ||||
Protein_position | 249-? | ||||
Intron_number | 3-4/7 | ||||
Exon_number | 3-4/8 | ||||
F22E12.4d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F22E12.4d.1:c.973_1083+2del | ||||
cDNA_position | 981-? | ||||
CDS_position | 973-? | ||||
Protein_position | 325-? | ||||
Intron_number | 6-7/10 | ||||
Exon_number | 6-7/11 | ||||
Interactor (115) | |||||
Genetics | Interpolated_map_position | V | 2.56732 | ||
Description (2) | |||||
Reference (15) | |||||
Method | Deletion_allele |