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WormBase Tree Display for Variation: WBVar00242554

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Name Class

WBVar00242554NamePublic_namesa307
Other_nameF22E12.4c.1:c.199_309+2del
F22E12.4b.3:c.973_1083+2del
F22E12.4a.1:c.973_1083+2del
F22E12.4e.1:c.745_855+2del
F22E12.4d.1:c.973_1083+2del
F22E12.4b.1:c.973_1083+2del
F22E12.4b.2:c.973_1083+2del
HGVSgCHROMOSOME_V:g.10473776_10474018del
Sequence_detailsSMapS_parentSequenceY32F6B
Flanking_sequencesaactccgctgacccaaaaattaattacaagaagttggtggtacagtacccttgatgcagt
Mapping_targetY32F6B
Type_of_mutationDeletion
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004676
WBStrain00004678
WBStrain00022795
WBStrain00040834
WBStrain00040846
LaboratoryJT
StatusLive
AffectsGeneWBGene00001178
TranscriptF22E12.4b.3VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScF22E12.4b.3:c.973_1083+2del
cDNA_position973-?
CDS_position973-?
Protein_position325-?
Intron_number5-6/10
Exon_number5-6/11
F22E12.4b.2VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScF22E12.4b.2:c.973_1083+2del
cDNA_position979-?
CDS_position973-?
Protein_position325-?
Intron_number6-7/8
Exon_number6-7/9
F22E12.4a.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScF22E12.4a.1:c.973_1083+2del
cDNA_position981-?
CDS_position973-?
Protein_position325-?
Intron_number6-7/11
Exon_number6-7/12
F22E12.4b.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScF22E12.4b.1:c.973_1083+2del
cDNA_position981-?
CDS_position973-?
Protein_position325-?
Intron_number6-7/10
Exon_number6-7/11
F22E12.4c.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScF22E12.4c.1:c.199_309+2del
cDNA_position203-?
CDS_position199-?
Protein_position67-?
Intron_number3-4/8
Exon_number3-4/9
F22E12.4e.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScF22E12.4e.1:c.745_855+2del
cDNA_position745-?
CDS_position745-?
Protein_position249-?
Intron_number3-4/7
Exon_number3-4/8
F22E12.4d.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScF22E12.4d.1:c.973_1083+2del
cDNA_position981-?
CDS_position973-?
Protein_position325-?
Intron_number6-7/10
Exon_number6-7/11
InteractorWBInteraction000007904
WBInteraction000007906
WBInteraction000007908
WBInteraction000007910
WBInteraction000007911
WBInteraction000007912
WBInteraction000007913
WBInteraction000007914
WBInteraction000007916
WBInteraction000007918
WBInteraction000007920
WBInteraction000007922
WBInteraction000007924
WBInteraction000007926
WBInteraction000007928
WBInteraction000007929
WBInteraction000007930
WBInteraction000007934
WBInteraction000007939
WBInteraction000007941
WBInteraction000007942
WBInteraction000007945
WBInteraction000007946
WBInteraction000007948
WBInteraction000007949
WBInteraction000007951
WBInteraction000007954
WBInteraction000007957
WBInteraction000007958
WBInteraction000007959
WBInteraction000007960
WBInteraction000007961
WBInteraction000007963
WBInteraction000007966
WBInteraction000007970
WBInteraction000007971
WBInteraction000007973
WBInteraction000007975
WBInteraction000007976
WBInteraction000007977
WBInteraction000007978
WBInteraction000007979
WBInteraction000007980
WBInteraction000007982
WBInteraction000007984
WBInteraction000007986
WBInteraction000007988
WBInteraction000007990
WBInteraction000007992
WBInteraction000007993
WBInteraction000007994
WBInteraction000007995
WBInteraction000007996
WBInteraction000007999
WBInteraction000008000
WBInteraction000008001
WBInteraction000008003
WBInteraction000008005
WBInteraction000008007
WBInteraction000008009
WBInteraction000008011
WBInteraction000008013
WBInteraction000008015
WBInteraction000008017
WBInteraction000008019
WBInteraction000008021
WBInteraction000008023
WBInteraction000008025
WBInteraction000008027
WBInteraction000008029
WBInteraction000008031
WBInteraction000008034
WBInteraction000008037
WBInteraction000008038
WBInteraction000008040
WBInteraction000008043
WBInteraction000008044
WBInteraction000008045
WBInteraction000008048
WBInteraction000008050
WBInteraction000008051
WBInteraction000008054
WBInteraction000008059
WBInteraction000008065
WBInteraction000008066
WBInteraction000008067
WBInteraction000008069
WBInteraction000008070
WBInteraction000008072
WBInteraction000008073
WBInteraction000008074
WBInteraction000052952
WBInteraction000500251
WBInteraction000502640
WBInteraction000503646
WBInteraction000503647
WBInteraction000503648
WBInteraction000503649
WBInteraction000503650
WBInteraction000503651
WBInteraction000503652
WBInteraction000504805
WBInteraction000504806
WBInteraction000517465
WBInteraction000518662
WBInteraction000518663
WBInteraction000518665
WBInteraction000518666
WBInteraction000518667
WBInteraction000520581
WBInteraction000520582
WBInteraction000524655
WBInteraction000524657
WBInteraction000536403
WBInteraction000536404
GeneticsInterpolated_map_positionV2.56732
DescriptionPhenotype (20)
Phenotype_not_observedWBPhenotype:0001381Paper_evidenceWBPaper00046527
Curator_confirmedWBPerson2987
Remarkegl-9(sa307) mutant worms were not resistant to anoxia exposure when fed a glucose-supplemented diet (Figure S1C)Paper_evidenceWBPaper00046527
Curator_confirmedWBPerson2987
Affected_byMoleculeWBMol:00003916Paper_evidenceWBPaper00046527
Curator_confirmedWBPerson2987
WBPhenotype:0001990Paper_evidenceWBPaper00046162
Curator_confirmedWBPerson2857
Remarkanimals develop the same number of polyglutamine aggregates as wild-type when exposed to environments with either 1000 ppm or 5000 ppm oxygenPaper_evidenceWBPaper00046162
Curator_confirmedWBPerson2857
Reference (15)
MethodDeletion_allele