WormBase Tree Display for Variation: WBVar00239284
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WBVar00239284 | Evidence | Paper_evidence | WBPaper00031936 | ||||||
---|---|---|---|---|---|---|---|---|---|
Name | Public_name | pk349 | |||||||
Other_name | pk349df | ||||||||
CE20515:p.Ile67Ter | |||||||||
C16A11.1b.1:c.697_1492del | |||||||||
C16A11.1a.1:c.199_994del | |||||||||
C16A11.1a.2:c.199_994del | |||||||||
CE45827:p.Ile233Ter | |||||||||
HGVSg | CHROMOSOME_II:g.4253250_4255183del | ||||||||
Sequence_details | SMap | S_parent | Sequence | C16A11 | |||||
Flanking_sequences | gatttggattacgtgaattttcgatattta | taaccaatgcgacagacactcggaatattg | |||||||
Mapping_target | C16A11 | ||||||||
Type_of_mutation | Insertion | ||||||||
Deletion | |||||||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00028933 | ||||||||
Laboratory | NL | ||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00001673 | |||||||
Transcript | C16A11.1a.1 (11) | ||||||||
C16A11.1b.1 (11) | |||||||||
C16A11.1a.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | C16A11.1a.2:c.199_994del | ||||||||
HGVSp | CE20515:p.Ile67Ter | ||||||||
cDNA_position | 461-1256 | ||||||||
CDS_position | 199-994 | ||||||||
Protein_position | 67-332 | ||||||||
Intron_number | 4-6/8 | ||||||||
Exon_number | 4-7/9 | ||||||||
Codon_change | ATCTACAGTAATATCATGCAATCAATGGATCAATTATTAGAAGCCGCCGAATTTTTTCATTTTCCACCGGATGATAGTCCTTCGATTAGAAGGGCACTTAATCATTATAAATCATATAAAGTTCGGTATAGTACGTCGGAAGTCGAGTTGAATCGAGAATTGGCGGATTCGTTGTCGAAATTGTATAATGCAGAGTTTATTAAATCGGTTTTAAATCGAAAGAATGAACTCAAATTGTTGGATTCTGCGGTTTAGTGAGTTTTATTTATTTGCTGAAAAATTGAAAATAAATTTTGAAATTTGTTTTTTTTTGTTTTGAAATTTTTTTTTGAAATCAAAGTTTTGAAGCATGTATCACGTATGCTTTTCTTCAAGGCGCCCCTAGTAAACAGGCGTAGGTGGCTGGTAGGTAAAATGAAAAATGCAGAAAATAGGCGGCAGGTAGGCCTGCCTGAAGGTTGAAGGAATTTTTTTTTGAGAAAATATAAATTATATTCAAAAAAATTAAATCTGTTATAAATAATTTTTGTAGAATTAACATTACCAACTTTCTGAAAAATCAATCTTATACAATTTGAAACAAGCTCCAAGTTTGTACAAAATCGGAAATTTTGGAATTTCAGCTGATTTTTACAAAAAAATTTTATAAAATCGCAGAAAACACGTTTAAAATGTCAATTGTTTCCATTTAATTTGAATATTGTTAAAGTTAAAAAAAGCCAGAGATTTTTAAAAATTACACCAAATATTTGATAAAAAACTTTTGAAATTTTTGAAAAAAAAACTTTTAAAAAATTGTTTTCAAAAACCGAAAATTGTGCATTTTTGTTTAAATTTGTTCTAAAATTTTGAAAAAAACGTACTAATTTTTGTGGTGGCTTATCAGAAAAAAATCAAATAAAATTAGAAATAGCTGTATTTAATTTTTCAAAAATTCAAATTTCTCAAAATCTCAAATTTTCCCATTCAGTTTTCTGGATGACATTGATCGAATATCAGCACACGAGTACAAGCCAACAGAGATGGATGTTCTAAGAGCACGAGTTCCGACGACGGGTATTACGGAAATTGAGTTCCCATTTAAACAAGCAAGTTTAAGGTATGTTTGTCACGAATTAAAAAAAATAAATTTGATGAAATTCAGCTGCTTATGATTTCAGAGTAATGCAAAATAAATAATTTTCAATTAAAAAAAATTGAGAGTTTTTTTTCAGAATGGTGGATGTCGGTGGTCAACGATCAGAACAGAGGAAGTGGGTGAGTCAAAATTGTTGAGGAACATTTTTCGGCGGAAAATTCTAATTTTCCATGTAAAAAATATAACGGGAAGTTGGAAGAAATCTTCGGAAAAGTTCGAGAATCTTTGGTACAAGTTTTCAACCGTCTGGAAATTTTTGTGAAAATCTAAAAGAGGCTTGGAACTTTCTGGAGATTTCTAGGAAACGACTAGAAAATTTGAAAACTTATGAAATGTTTCAGAAACTCCACTAGATTTTTGAGAATTTTCAAGAAATCTAGATTTTTAGATCGAGTAAAACAAGTTGGAAAACGCCAGTTTTTTCAGATCCACTGTTTCGACAATGTGAATGGAGTCTTATTTATAGCAGCAATAAGTGGATATAATTTATATGATGAAGATGAAGAAAATAGAAAAGATGATGGAACACCAACAAAAACCAATCGATTGCGATATTCAATGGAATTATTCAAAAGAATCGCGAATCATCAGTGCTTTAGCAAGAAAACCGCGATGATTCTATTTTTAAACAAAATTGATATTTTCAAAGAAAAAATCGGAAAGTATCCACTAACAACGTGCTTTAAAAATTACAAAGGTGTGAATGCATTCGAGCCGGCGTGTAAGTACGTGACAGACCGATTCTCACGGCTTGTCAGCGGGGATATTCAACACGAGAAGCCTCTGTACACGCATAta/ta | ||||||||
Amino_acid_change | IYSNIMQSMDQLLEAAEFFHFPPDDSPSIRRALNHYKSYKVRYSTSEVELNRELADSLSKLYNAEFIKSVLNRKNELKLLDSAV**VLFIC*KIENKF*NLFFFVLKFFFEIKVLKHVSRMLFFKAPLVNRRRWLVGKMKNAENRRQVGLPEG*RNFFLRKYKLYSKKLNLL*IIFVELTLPTF*KINLIQFETSSKFVQNRKFWNFS*FLQKNFIKSQKTRLKCQLFPFNLNIVKVKKSQRFLKITPNI**KTFEIFEKKTFKKLFSKTENCAFLFKFVLKF*KKRTNFCGGLSEKNQIKLEIAVFNFSKIQISQNLKFSHSVFWMTLIEYQHTSTSQQRWMF*EHEFRRRVLRKLSSHLNKQV*GMFVTN*KK*I**NSAAYDFRVMQNK*FSIKKN*EFFFRMVDVGGQRSEQRKWVSQNC*GTFFGGKF*FSM*KI*REVGRNLRKSSRIFGTSFQPSGNFCENLKEAWNFLEISRKRLENLKTYEMFQKLH*IFENFQEI*IFRSSKTSWKTPVFSDPLFRQCEWSLIYSSNKWI*FI**R*RK*KR*WNTNKNQSIAIFNGIIQKNRESSVL*QENRDDSIFKQN*YFQRKNRKVSTNNVL*KLQRCECIRAGV*VRDRPILTACQRGYSTREASVHAYX/X | ||||||||
Isolation | Mutagen | EMS | |||||||
Genetics | Interpolated_map_position | II | -5.00625 | ||||||
Mapping_data | In_multi_point | 4377 | |||||||
Description | Phenotype (18) | ||||||||
Phenotype_not_observed | WBPhenotype:0001048 | Paper_evidence | WBPaper00003465 | ||||||
Curator_confirmed | WBPerson291 | ||||||||
WBPhenotype:0001414 | Paper_evidence | WBPaper00003465 | |||||||
Curator_confirmed | WBPerson291 | ||||||||
WBPhenotype:0001434 | Paper_evidence | WBPaper00003465 | |||||||
Curator_confirmed | WBPerson291 | ||||||||
WBPhenotype:0001765 | Paper_evidence | WBPaper00031936 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | Animals with mutations in individual G protein subunits respond normally to CO2 | Paper_evidence | WBPaper00031936 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
EQ_annotations | Life_stage | WBls:0000057 | PATO:0000460 | Paper_evidence | WBPaper00031936 | ||||
Curator_confirmed | WBPerson2021 | ||||||||
Phenotype_assay | Treatment | 10% CO2 | Paper_evidence | WBPaper00031936 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0002535 | Paper_evidence | WBPaper00003465 | |||||||
Curator_confirmed | WBPerson291 | ||||||||
Reference | WBPaper00043908 | ||||||||
WBPaper00031936 | |||||||||
WBPaper00003465 | |||||||||
Method | Deletion_and_insertion_allele |