WormBase Tree Display for Variation: WBVar00239158

WBVar00239158 Name: Public_name: pk16
    Other_name: pk16te
      F38E1.5.1:c.118+383_*15del
    HGVSg: CHROMOSOME_V:g.8371514_8373701del
  Sequence_details: SMap: S_parent: Sequence: F38E1
    Flanking_sequences: tggaaaccgttgagaagaatctgaagcttt tttgttttgtgctctatgtctgttgtgcta
    Mapping_target: F38E1
    Type_of_mutation: Insertion
      Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
    Transposon_insertion: Tc1
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00007863
      WBStrain00028899
      WBStrain00028902
    Laboratory: NL
    Status: Live
  Affects: Gene: WBGene00001664
    Transcript: F38E1.5.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F38E1.5.1:c.118+383_*15del
        cDNA_position: ?-1095
        Intron_number: 2-9/10
        Exon_number: 3-11/11
    Interactor: WBInteraction000523954
  Isolation: Mutagen: Tc1
    Reverse_genetics: Screen for Tc1 deletions
    Derived_from_variation: WBVar00239144
  Genetics: Interpolated_map_position: V 1.34565
  Description: Phenotype (13)
    Phenotype_not_observed: WBPhenotype:0001414 Paper_evidence: WBPaper00003465
        Curator_confirmed: WBPerson291
      WBPhenotype:0001434 Paper_evidence: WBPaper00003465
        Curator_confirmed: WBPerson291
        Remark: No defects when tested for response to glucose, CuSo4, 4M fructose, SDS and various volatile chemicals. Paper_evidence: WBPaper00003465
            Curator_confirmed: WBPerson291
        Affected_by: Molecule: WBMol:00005569 Paper_evidence: WBPaper00003465
              Curator_confirmed: WBPerson291
            WBMol:00003937 Paper_evidence: WBPaper00003465
              Curator_confirmed: WBPerson291
            WBMol:00002899 Paper_evidence: WBPaper00003465
              Curator_confirmed: WBPerson291
            WBMol:00003977 Paper_evidence: WBPaper00003465
              Curator_confirmed: WBPerson291
      WBPhenotype:0001765 Paper_evidence: WBPaper00031936
        Curator_confirmed: WBPerson2021
        Remark: Animals with mutations in individual G protein subunits respond normally to CO2 Paper_evidence: WBPaper00031936
            Curator_confirmed: WBPerson2021
        EQ_annotations: Life_stage: WBls:0000057 PATO:0000460 Paper_evidence: WBPaper00031936
                Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: 10% CO2 Paper_evidence: WBPaper00031936
              Curator_confirmed: WBPerson2021
      WBPhenotype:0001838 Paper_evidence: WBPaper00035254
        Curator_confirmed: WBPerson2021
        Remark: Mutants do not affect pheromone-mediated downregulation of str-3p::gfp expression Paper_evidence: WBPaper00035254
            Curator_confirmed: WBPerson2021
      WBPhenotype:0002212 Paper_evidence: WBPaper00003465
        Curator_confirmed: WBPerson291
  Reference: WBPaper00001784
    WBPaper00043908
    WBPaper00031936
    WBPaper00003465
    WBPaper00035254
  Remark: deletion
    Insertion is a tc1 element
  Method: Transposon_insertion