WormBase Tree Display for Gene: WBGene00001664
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| WBGene00001664 | SMap | S_parent | Sequence | F38E1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | gpa-2 | Person_evidence | WBPerson625 | |||||
| Sequence_name | F38E1.5 | ||||||||
| Molecular_name | F38E1.5 | ||||||||
| F38E1.5.1 | |||||||||
| CE04523 | |||||||||
| Other_name | CELE_F38E1.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | gpa-2 | ||||||||
| DB_info | Database | AceView | gene | 5I853 | |||||
| WormQTL | gene | WBGene00001664 | |||||||
| WormFlux | gene | WBGene00001664 | |||||||
| NDB | locus_tag | CELE_F38E1.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001664|UniProtKB=P22454 | |||||||
| family | PTHR10218 | ||||||||
| NCBI | gene | 179219 | |||||||
| RefSeq | protein | NM_072756.5 | |||||||
| SwissProt | UniProtAcc | P22454 | |||||||
| UniProt_GCRP | UniProtAcc | P22454 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gpa | ||||||||
| Allele (41) | |||||||||
| Legacy_information | [C.elegansII] pk19, pk2, pk23, pk24, pk16. Tc1 insertion, also excision derivatives: no obvious phenotype, some reduction in dauer formation, stronger with gpa-3(O). Cloned: gpa-2:lacZ expressed in phasmid neurons, some nerve ring neurons, PVT, sphincter. [Lochrie et al. 1991; PS; NL] | ||||||||
| Strain | WBStrain00028899 | ||||||||
| WBStrain00028902 | |||||||||
| WBStrain00007863 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (25) | |||||||||
| Ortholog (45) | |||||||||
| Paralog (21) | |||||||||
| Structured_description | Concise_description | gpa-2 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases that is involved in dauer formation and chemotaxis to water-soluble odorants; it is expressed in the phasmid neurons PHA and PHB, three pharyngeal neurons, one interneuron, three pairs of head neurons, and the anal sphincter muscle. | Curator_confirmed | WBPerson48 | |||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Involved in several processes, including defense response to Gram-negative bacterium; olfactory learning; and positive regulation of gene expression. Located in axon; neuronal cell body; and non-motile cilium. Expressed in anal sphincter muscle; ganglia; and pharyngeal cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F38E1.5 | |||||||
| Corresponding_transcript | F38E1.5.1 | ||||||||
| Associated_feature | WBsf1000639 | ||||||||
| WBsf1000640 | |||||||||
| WBsf1020020 | |||||||||
| WBsf232099 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00103344 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046709 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103347 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014559 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014563 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046710 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr538 | ||||||||
| Expr539 | |||||||||
| Expr3065 | |||||||||
| Expr1023128 | |||||||||
| Expr1150590 | |||||||||
| Expr2012191 | |||||||||
| Expr2030427 | |||||||||
| Marker43 | |||||||||
| Drives_construct | WBCnstr00001699 | ||||||||
| WBCnstr00004639 | |||||||||
| WBCnstr00004642 | |||||||||
| WBCnstr00012427 | |||||||||
| WBCnstr00012428 | |||||||||
| WBCnstr00036791 | |||||||||
| Construct_product | WBCnstr00001699 | ||||||||
| WBCnstr00004642 | |||||||||
| WBCnstr00012427 | |||||||||
| WBCnstr00012428 | |||||||||
| WBCnstr00036791 | |||||||||
| Antibody | WBAntibody00000769 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (118) | |||||||||
| Interaction (17) | |||||||||
| Anatomy_function | WBbtf0865 | ||||||||
| WBbtf0866 | |||||||||
| Map_info | Map | V | Position | 1.34551 | Error | 0.005648 | |||
| Positive | Positive_clone | F38E1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| RP#G3/2 | |||||||||
| Mapping_data | Multi_point | 4368 | |||||||
| Pseudo_map_position | |||||||||
| Reference (70) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
