WormBase Tree Display for Gene: WBGene00001664
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WBGene00001664 | SMap | S_parent | Sequence | F38E1 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | gpa | ||||||
Allele (41) | |||||||
Legacy_information | [C.elegansII] pk19, pk2, pk23, pk24, pk16. Tc1 insertion, also excision derivatives: no obvious phenotype, some reduction in dauer formation, stronger with gpa-3(O). Cloned: gpa-2:lacZ expressed in phasmid neurons, some nerve ring neurons, PVT, sphincter. [Lochrie et al. 1991; PS; NL] | ||||||
Strain | WBStrain00028899 | ||||||
WBStrain00028902 | |||||||
WBStrain00007863 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (25) | |||||||
Ortholog (45) | |||||||
Paralog (21) | |||||||
Structured_description | Concise_description | gpa-2 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases that is involved in dauer formation and chemotaxis to water-soluble odorants; it is expressed in the phasmid neurons PHA and PHB, three pharyngeal neurons, one interneuron, three pairs of head neurons, and the anal sphincter muscle. | Curator_confirmed | WBPerson48 | |||
WBPerson567 | |||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Involved in several processes, including defense response to Gram-negative bacterium; olfactory learning; and positive regulation of gene expression. Located in axon; neuronal cell body; and non-motile cilium. Expressed in anal sphincter muscle; ganglia; and pharyngeal cell. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F38E1.5 | |||||
Corresponding_transcript | F38E1.5.1 | ||||||
Associated_feature | WBsf1000639 | ||||||
WBsf1000640 | |||||||
WBsf1020020 | |||||||
WBsf232099 | |||||||
Experimental_info | RNAi_result | WBRNAi00103344 | Inferred_automatically | RNAi_primary | |||
WBRNAi00046709 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00103347 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00014559 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00014563 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00046710 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr538 | ||||||
Expr539 | |||||||
Expr3065 | |||||||
Expr1023128 | |||||||
Expr1150590 | |||||||
Expr2012191 | |||||||
Expr2030427 | |||||||
Marker43 | |||||||
Drives_construct | WBCnstr00001699 | ||||||
WBCnstr00004639 | |||||||
WBCnstr00004642 | |||||||
WBCnstr00012427 | |||||||
WBCnstr00012428 | |||||||
WBCnstr00036791 | |||||||
Construct_product | WBCnstr00001699 | ||||||
WBCnstr00004642 | |||||||
WBCnstr00012427 | |||||||
WBCnstr00012428 | |||||||
WBCnstr00036791 | |||||||
Antibody | WBAntibody00000769 | ||||||
Microarray_results (20) | |||||||
Expression_cluster (118) | |||||||
Interaction (17) | |||||||
Anatomy_function | WBbtf0865 | ||||||
WBbtf0866 | |||||||
Map_info | Map | V | Position | 1.34551 | Error | 0.005648 | |
Positive | Positive_clone | F38E1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
RP#G3/2 | |||||||
Mapping_data | Multi_point | 4368 | |||||
Pseudo_map_position | |||||||
Reference (70) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |