WormBase Tree Display for Variation: WBVar00237706
expand all nodes | collapse all nodes | view schema
| WBVar00237706 | Name | Public_name | WBVar00237706 | ||
|---|---|---|---|---|---|
| Other_name | pas49482 | ||||
| F53C3.13c.1:c.288+372del | |||||
| F53C3.13a.1:c.288+372del | |||||
| F53C3.13d.1:c.288+372del | |||||
| F53C3.13b.1:c.288+372del | |||||
| F53C3.13f.1:c.288+372del | |||||
| F53C3.13e.1:c.288+372del | |||||
| F53C3.13d.2:c.288+372del | |||||
| HGVSg | CHROMOSOME_II:g.3926545del | ||||
| Sequence_details | SMap | S_parent | Sequence | Y14H12B | |
| Flanking_sequences | ttttgattttttcagaaaatcgaatcgaaaaatcgaaaatttttcgttattcgttttttttttcgatttttcaaaaattagcctaatattttggccgttattctttcttttagaagaaattttaatgttttttcttatcaatataacaaaattagattaaaaatcatattttatggttaattttctgaggtttttttttcgatttttcgaatttcaccaaaaaacatttctttttttatctgtagctttttttaaaagtgaaattcgaattttcaaaattaaatttatcgcgttttgcct | aaaaaagactattacgggagcacacaattctgaaaatgcgtattgcacaacatatttgacgtgcaaaatatctcaaactacagtaattctttaaatgcctactgtagtgcttgtgtcgatttacgcgagcccgtatatcgacaccattgatacagtagtcgtttaaagaaatactgtagtttgagatattttgcacgtcaaatatgttgtgcaatacgcattctcagaattttagaaaaaactgcttctcctcggggagtacacgacggctgcgtaaatcgacacacttgtttttaagc | |||
| Mapping_target | Y14H12B | ||||
| Type_of_mutation | Deletion | A | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | ||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00018756 | |||
| Transcript | F53C3.13e.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53C3.13e.1:c.288+372del | ||||
| Intron_number | 3/6 | ||||
| F53C3.13b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53C3.13b.1:c.288+372del | ||||
| Intron_number | 3/6 | ||||
| F53C3.13d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53C3.13d.1:c.288+372del | ||||
| Intron_number | 3/7 | ||||
| F53C3.13a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53C3.13a.1:c.288+372del | ||||
| Intron_number | 3/6 | ||||
| F53C3.13d.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53C3.13d.2:c.288+372del | ||||
| Intron_number | 3/6 | ||||
| F53C3.13f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53C3.13f.1:c.288+372del | ||||
| Intron_number | 3/6 | ||||
| F53C3.13c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53C3.13c.1:c.288+372del | ||||
| Intron_number | 3/6 | ||||
| Method | WGS_Pasadena_Quinlan |
