WormBase Tree Display for Variation: WBVar00233472
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| WBVar00233472 | Name | Public_name | WBVar00233472 | ||
|---|---|---|---|---|---|
| Other_name | pas45248 | ||||
| W09B6.1a.3:c.55-44del | |||||
| W09B6.1c.1:c.388-44del | |||||
| W09B6.1a.4:c.55-44del | |||||
| W09B6.1a.1:c.55-44del | |||||
| W09B6.1b.1:c.55-44del | |||||
| W09B6.1a.2:c.55-44del | |||||
| HGVSg | CHROMOSOME_II:g.1144505del | ||||
| Sequence_details | SMap | S_parent | Sequence | W09B6 | |
| Flanking_sequences | tcagatcgatgagcacttttctcgagaaaattaacaaaatcgaagaattttcagatttttaacctaaaaaaagcgttttttcgatgaaaattaagaatttttcatgtaaaaattggcttttatccagaaaatattgagaaaaaccggccaaaaactgccttttcctacaaaaattgagttatggcttctaaagttgagatcgatgcaccatgatcacttttttaggaaaagttttaaaaaatcagtatttttaacgcgtaaaactagtgttttttcatgataaaatgtagaaaatcagta | ttttaacataaaaatggtatttttgatcaaaaaaatttttcagtcgctgaccaacgatgccgccgatcagtacgagagcatggagcagttcattcactctcacgtggccgatattgagaagagaaggcccatcaagagggtaagttgttgggcttaaaatgatgaaatttgactgaaaatccagaaaaaacgaaaaaatttgatccaaaatgagctttttttggcatttttagtgcaaaaatcgcaaaaaagtgctcactttttgtctatttttcgcattttttggactaaaaatcaca | |||
| Mapping_target | W09B6 | ||||
| Type_of_mutation | Deletion | T | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | ||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00004076 | |||
| Transcript | W09B6.1a.2 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | W09B6.1a.2:c.55-44del | ||||
| Intron_number | 2/9 | ||||
| W09B6.1c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W09B6.1c.1:c.388-44del | ||||
| Intron_number | 4/10 | ||||
| W09B6.1a.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W09B6.1a.3:c.55-44del | ||||
| Intron_number | 3/10 | ||||
| W09B6.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W09B6.1a.1:c.55-44del | ||||
| Intron_number | 5/12 | ||||
| W09B6.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W09B6.1b.1:c.55-44del | ||||
| Intron_number | 1/5 | ||||
| W09B6.1a.4 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W09B6.1a.4:c.55-44del | ||||
| Intron_number | 2/10 | ||||
| Method | WGS_Pasadena_Quinlan |
