WormBase Tree Display for Variation: WBVar00229267
expand all nodes | collapse all nodes | view schema
| WBVar00229267 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00229267 | |||
| Other_name | pas41043 | ||||
| snp_W01F3[1] | |||||
| cewivar00115123 | |||||
| W01F3.1b.1:c.188-460C>T | |||||
| W01F3.1a.1:c.349+149C>T | |||||
| HGVSg | CHROMOSOME_V:g.20656484C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | W01F3 | |
| Flanking_sequences | caataaatccatgatgatcgaaggtgacgtattcatgcaagctcatcgtcgtccacgtcatcgagccgttccagtgatgaaggccgacactaaattggccgatcgaatcacatttaaggaatggctcagagaagtggccaccatgaacaagggtaaatagttttaaaattttatttcaaaaaaaataaagatcctcctccccctacttaatttttcacagtcttgcttccgttttcaagtattttccatttattataggcttttttattttactctctaaaaatgatcgaaaatcgtctg | tttgattatctgcaattagttcaaattgtccaatttccgtccgctcttccgcacattcctccaccaattgccccattcgtaatcagttagttgatacacattactatacgtatgacccttaaccacgccctaccgacctacagtaatctatcatgttcttgtctaggaggaaaatgtctcaatgacaaccggttggtgatggcaacatattttcaaaggggtggaggtccaaaagttttgagtgggggtgcatagattatcgacacgttttatgtgtttctagctgtcagatgggccaaa | |||
| Mapping_target | W01F3 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (28) | |||||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| History | Acquires_merge | WBVar00246562 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00012184 | |||
| Transcript | W01F3.1a.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | W01F3.1a.1:c.349+149C>T | ||||
| Intron_number | 4/11 | ||||
| W01F3.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W01F3.1b.1:c.188-460C>T | ||||
| Intron_number | 3/10 | ||||
| Reference | WBPaper00004703 | ||||
| Method | WGS_Pasadena_Quinlan |
