WormBase Tree Display for Variation: WBVar00223543
expand all nodes | collapse all nodes | view schema
WBVar00223543 | Name | Public_name | WBVar00223543 | ||
---|---|---|---|---|---|
Other_name | pas35319 | ||||
T01C8.1b.1:c.143+1526T>C | |||||
T01C8.1a.1:c.143+1526T>C | |||||
HGVSg | CHROMOSOME_X:g.16797757T>C | ||||
Sequence_details | SMap | S_parent | Sequence | T01C8 | |
Flanking_sequences | ataggttattattttttattgcagccgacaattttttgtggcaatttatatacaaaagcataaatatctgagatgcttagtttcatagaaattcagttcaagaggcttcaccgtataatataatatattcttgctgaaactacaggaaaatttagtgggaacttgtgaaatttgaaagctcccagattcgattttgtcattcttttatgcaatgcaaaaattatttttaaaaaactgttttcgacattttctcatgatttgtgaaaaagtttttttctcaaatagaagttaagctcattt | tctaaatagtttttctaaaccctggattgtctcaaatccgctgtagaaaagttgaagcgactgacatcttatgagctaaatttttcctgagtttttgaaatagactacatcttgataattgaacattacagtttgacaaaatttataaaaatattgatcagttggattttattatttttctgttgttttgttctagctccagtagggtggatatttttcaaaaatctcaaatttttgtgcaacttctattagtacaaatataaaaatatttcaaacgtgcactttttgaacatggacata | |||
Mapping_target | T01C8 | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | ||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
Status | Live | ||||
Affects | Gene | WBGene00020142 | |||
Transcript | T01C8.1b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | T01C8.1b.1:c.143+1526T>C | ||||
Intron_number | 1/10 | ||||
T01C8.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T01C8.1a.1:c.143+1526T>C | ||||
Intron_number | 2/11 | ||||
Method | WGS_Pasadena_Quinlan |