WormBase Tree Display for Variation: WBVar00222515
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| WBVar00222515 | Name | Public_name | WBVar00222515 | ||
|---|---|---|---|---|---|
| Other_name | pas34291 | ||||
| haw148176 | |||||
| cewivar00030250 | |||||
| K08E3.6.1:c.1083+6T>G | |||||
| K08E3.13:n.100A>C | |||||
| HGVSg | CHROMOSOME_III:g.13769991A>C | ||||
| Sequence_details | SMap | S_parent | Sequence | K08E3 | |
| Flanking_sequences | ggtatgcacgggagatgaagtttgttgcagcaactacgatggacaacctggtgacagtctctgcatttcattgatgtggcgagcttcagggctgtagcacatttgtcgcattttcgcatctgaaaatcaaaaaggtattaaaacagtgtggcaattcatgtttaacagaaaaaataggaattctttgttcagaaatagatgtttgcaacatggggtccgagacggacgcgcctcttcatgattagcatgattttcatcactacagagctcactttaaagaaatttgttagcattttttac | cgtaccgctttgattcctgcctctataaacgtgtgtggtctcattgcgatgtcacgagttgttccattagtccacgccggcgtgccacgtttcagggttcggatatcaagtgtgcttttggtgagaatggcggacgacatgccgaggccgatgttatttgtggtttgtcctggtgtttgatcgcatgatggaatacttccacagctcaagctcctgcgggtgagctggcggtgaagtgagacacgtggcgggtcctggttctgagctcgagagttatgaatagtagtggtggtggtggta | |||
| Mapping_target | K08E3 | ||||
| Type_of_mutation | Substitution | A | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (26) | |||||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00568041 | |||
| WBVar01274463 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00197401 | |||
| WBGene00000875 | |||||
| Transcript | K08E3.6.1 | VEP_consequence | splice_region_variant,intron_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | K08E3.6.1:c.1083+6T>G | ||||
| Intron_number | 5/7 | ||||
| K08E3.13 | VEP_consequence | non_coding_transcript_exon_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | K08E3.13:n.100A>C | ||||
| cDNA_position | 100 | ||||
| Exon_number | 1/1 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
