WormBase Tree Display for Variation: WBVar00216745
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WBVar00216745 | Name | Public_name | WBVar00216745 | ||
---|---|---|---|---|---|
Other_name | pas28521 | ||||
cewivar00115771 | |||||
R12H7.1b.1:c.363T>C | |||||
CE28246:p.Ile185= | |||||
CE51729:p.Ile121= | |||||
R12H7.1a.2:c.555T>C | |||||
R12H7.1a.1:c.555T>C | |||||
HGVSg | CHROMOSOME_X:g.13214452T>C | ||||
Sequence_details | SMap | S_parent | Sequence | R12H7 | |
Flanking_sequences | aagctacattccgcaaaacattccgcaaaaaaaaaaatagagttaccagttatcaatgatcggggtacacctattctagagataatctgattcaaagcattgaagctccgtaaacctaagttttgagatctgaatttttgatgctccacacccctctcggagaactccttcaaaactgaaaaaaaaacaacgatttctgaaaatttttgtttatcatcagattttttcggtttttcttctaatcttattatttttaattttacagatgtccggaaatcgtctgaaactgctcaacttgat | atttgcacacgatcttccggtgctgctgtcacgttcctctatatctctgtcaaaattctgtacaccgtgaacatcgtcggccaaatctttctactgaacacgtttctcggtaaccgtagcaaatggtacggactgcaagttctcaacgacttgatgaacggacgagaatgggaggagtctggtcattttccacgtgtaacgttatgtgactttgaagtaaaagtactgggaaacgtgcaccgacatacagtacaatgtgtacttatgattaacatgttcaacgagaagatctttctgttc | |||
Mapping_target | R12H7 | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (15) | |||||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00006749 | |||
Transcript | R12H7.1a.2 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | R12H7.1a.2:c.555T>C | ||||
HGVSp | CE28246:p.Ile185= | ||||
cDNA_position | 681 | ||||
CDS_position | 555 | ||||
Protein_position | 185 | ||||
Exon_number | 8/11 | ||||
Codon_change | atT/atC | ||||
Amino_acid_change | I | ||||
R12H7.1a.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | R12H7.1a.1:c.555T>C | ||||
HGVSp | CE28246:p.Ile185= | ||||
cDNA_position | 597 | ||||
CDS_position | 555 | ||||
Protein_position | 185 | ||||
Exon_number | 7/10 | ||||
Codon_change | atT/atC | ||||
Amino_acid_change | I | ||||
R12H7.1b.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | R12H7.1b.1:c.363T>C | ||||
HGVSp | CE51729:p.Ile121= | ||||
cDNA_position | 363 | ||||
CDS_position | 363 | ||||
Protein_position | 121 | ||||
Exon_number | 4/6 | ||||
Codon_change | atT/atC | ||||
Amino_acid_change | I | ||||
Method | WGS_Pasadena_Quinlan |