WormBase Tree Display for Variation: WBVar00202595
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WBVar00202595 | Name | Public_name | WBVar00202595 | ||
---|---|---|---|---|---|
Other_name | haw69871 | ||||
cewivar00046878 | |||||
Y50D4A.1d.1:c.1419C>A | |||||
CE50956:p.Ser187= | |||||
CE39852:p.Ser428= | |||||
CE50999:p.Ser473= | |||||
Y50D4A.1a.1:c.1677C>A | |||||
Y50D4A.1b.1:c.1284C>A | |||||
Y50D4A.1c.1:c.561C>A | |||||
CE27637:p.Ser559= | |||||
HGVSg | CHROMOSOME_V:g.1219000C>A | ||||
Sequence_details | SMap | S_parent | Sequence | Y50D4A | |
Flanking_sequences | cggatgcttctgaagatggagaatc | gaaaattctgacagcgaggatctca | |||
Mapping_target | Y50D4A | ||||
Type_of_mutation | Substitution | C | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (14) | |||||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00021735 | |||
Transcript | Y50D4A.1c.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | Y50D4A.1c.1:c.561C>A | ||||
HGVSp | CE50956:p.Ser187= | ||||
cDNA_position | 561 | ||||
CDS_position | 561 | ||||
Protein_position | 187 | ||||
Exon_number | 4/4 | ||||
Codon_change | tcC/tcA | ||||
Amino_acid_change | S | ||||
Y50D4A.1b.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | Y50D4A.1b.1:c.1284C>A | ||||
HGVSp | CE39852:p.Ser428= | ||||
cDNA_position | 1284 | ||||
CDS_position | 1284 | ||||
Protein_position | 428 | ||||
Exon_number | 6/6 | ||||
Codon_change | tcC/tcA | ||||
Amino_acid_change | S | ||||
Y50D4A.1a.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | Y50D4A.1a.1:c.1677C>A | ||||
HGVSp | CE27637:p.Ser559= | ||||
cDNA_position | 1684 | ||||
CDS_position | 1677 | ||||
Protein_position | 559 | ||||
Exon_number | 10/11 | ||||
Codon_change | tcC/tcA | ||||
Amino_acid_change | S | ||||
Y50D4A.1d.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | Y50D4A.1d.1:c.1419C>A | ||||
HGVSp | CE50999:p.Ser473= | ||||
cDNA_position | 1419 | ||||
CDS_position | 1419 | ||||
Protein_position | 473 | ||||
Exon_number | 7/7 | ||||
Codon_change | tcC/tcA | ||||
Amino_acid_change | S | ||||
Remark | [20081124 db] this Variation was previously named hw69871 | ||||
Method | WGS_Hawaiian_Waterston |