WormBase Tree Display for Variation: WBVar00188228

WBVar00188228 Evidence: Paper_evidence: WBPaper00038208
  Name: Public_name: WBVar00188228
    Other_name: haw55504
      haw152029
      cewivar00038409
      F47C12.2.1:c.1149+1723G>A
      F47C12.6.1:c.-644C>T
      F47C12.11:n.203C>T
    HGVSg: CHROMOSOME_IV:g.3993163G>A
  Sequence_details: SMap: S_parent: Sequence: F47C12
    Flanking_sequences: tccactagggtacacggtgtagttg acctctgccaattctccgacgaaca
    Mapping_target: F47C12
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain (20)
    Laboratory: RW
    Person: WBPerson1562
      WBPerson4037
    Analysis: WGS_Hawaiian_Waterston
      WGS_Yanai
      Million_mutation_project_reanalysis
    History: Acquires_merge: WBVar00571894
    Status: Live
  Affects: Gene: WBGene00018549
      WBGene00044691
      WBGene00018547
    Transcript: F47C12.2.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F47C12.2.1:c.1149+1723G>A
        Intron_number: 6/27
      F47C12.6.1 VEP_consequence: 5_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: F47C12.6.1:c.-644C>T
        cDNA_position: 183
        Exon_number: 2/9
    Pseudogene: F47C12.11 VEP_consequence: non_coding_transcript_exon_variant
        VEP_impact: MODIFIER
        HGVSc: F47C12.11:n.203C>T
        cDNA_position: 203
        Exon_number: 2/4
  Reference: WBPaper00038208
  Remark: [20081124 db] this Variation was previously named hw55504
  Method: WGS_Hawaiian_Waterston