WormBase Tree Display for Variation: WBVar00180929
expand all nodes | collapse all nodes | view schema
WBVar00180929 | Name | Public_name | WBVar00180929 | ||
---|---|---|---|---|---|
Other_name | haw48205 | ||||
cewivar00198928 | |||||
Y79H2A.3e.1:c.3142-605A>T | |||||
Y79H2A.3d.1:c.3142-605A>T | |||||
Y79H2A.3f.1:c.3163-605A>T | |||||
Y79H2A.3c.1:c.3142-1182A>T | |||||
Y79H2A.3b.1:c.3163-1182A>T | |||||
Y79H2A.3g.1:c.1237-605A>T | |||||
Y79H2A.3a.1:c.3163-605A>T | |||||
HGVSg | CHROMOSOME_III:g.12040162T>A | ||||
Sequence_details | SMap | S_parent | Sequence | Y79H2A | |
Flanking_sequences | tgaaaatgtgttttttaacagccta | aatggaaaataatccttttccttgc | |||
Mapping_target | Y79H2A | ||||
Type_of_mutation | Substitution | T | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
WGS_Hawaiian_Waterston | |||||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00013580 | |||
Transcript | Y79H2A.3e.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y79H2A.3e.1:c.3142-605A>T | ||||
Intron_number | 16/28 | ||||
Y79H2A.3g.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y79H2A.3g.1:c.1237-605A>T | ||||
Intron_number | 5/16 | ||||
Y79H2A.3c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y79H2A.3c.1:c.3142-1182A>T | ||||
Intron_number | 17/17 | ||||
Y79H2A.3f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y79H2A.3f.1:c.3163-605A>T | ||||
Intron_number | 16/23 | ||||
Y79H2A.3d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y79H2A.3d.1:c.3142-605A>T | ||||
Intron_number | 17/29 | ||||
Y79H2A.3b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y79H2A.3b.1:c.3163-1182A>T | ||||
Intron_number | 16/16 | ||||
Y79H2A.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y79H2A.3a.1:c.3163-605A>T | ||||
Intron_number | 17/29 | ||||
Remark | [20081124 db] this Variation was previously named hw48205 | ||||
Method | WGS_Hawaiian_Waterston |